Table 2

Candidate binding sites for the predicted lysine-specific regulator LysX*

Gene

Site

Position

Score


Desulfovibrio vulgaris

208064

lysX*-lysA

GTGGTACTAATcAGTACCAC

-277

6.82

206613

~mviN*

GTGGTtCTttgTAGTACtAC

-135

5.45

Desulfovibrio desulfuricans G20

394240

lysX*-lysA

GTaGTACTAAaTAGTACCAC

-43

6.70

393213

lysW*

GgcGTtCTAAagAGTACCAC

-145

5.88

394397

~mviN*

GTaGTtgTgATaAGaAaCAC

-275

4.70


Position relative to the start of translation. *New name introduced in this study. Lower case letters represent positions that do not conform to the consensus sequence.

Rodionov et al. Genome Biology 2004 5:R90   doi:10.1186/gb-2004-5-11-r90

Open Data