Table 4 |
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|
Candidate binding sites for the nickel regulator NikR |
||||||
|
Gene |
Operon |
Function |
Site |
Orientation |
Position* |
Score |
|
|
||||||
|
Geobacter sulfurreducens PCA |
||||||
|
381565 |
nik(MN)QO* |
Nickel transporter |
GTGTTAC-[N14]-GTgACAC |
→← |
-183 |
5.00 |
|
Geobacter metallireducens |
||||||
|
379930 |
nik(MN)QO* |
Nickel transporter |
GTGTTAC-[N13]-GTAACAC |
→← |
-63 |
5.22 |
|
Desulfuromonas species |
||||||
|
387207 |
nikQO* |
Nickel transporter |
GTGccAC-[N13]-GTAACAC |
→← |
-41 |
4.67 |
|
Desulfovibrio vulgaris |
||||||
|
206492 |
nikMQO* |
Nickel transporter |
GTGTTAt-[N13]-GTAACAC |
→← |
-120 |
5.00 |
|
208275 |
nikK* |
Additional component of Ni transporter |
GTgACAC-[N13]-GTGTaAC |
←→ |
-84 |
4.49 |
|
Desulfovibrio desulfuricans |
||||||
|
395510 |
nikKMLQO* |
Nickel transporter |
GTGTTAt-[N13]-GTAACAC |
→← |
-104 |
5.00 |
|
394565 |
hydAB |
Periplasmic Fe-only hydrogenase |
GTaTTAC-[N13]-GTAACAC |
→← |
-83 |
4.67 |
|
Desulfotalea psychrophila |
||||||
|
422915 |
nikMLKQO* |
Nickel transporter |
GTAACAC-[N13]-GTGTTAC |
←→ |
-20 |
5.22 |
|
422176 |
422176-177 |
? |
GTAACAC-[N13]-GTGTTAC |
←→ |
-197 |
5.22 |
|
GTAACAC-[N13]-GTGTTAC |
←→ |
-124 |
5.22 |
|||
|
|
||||||
|
*Position relative to the start of translation. |
||||||
|
Rodionov et al. Genome Biology 2004 5:R90 doi:10.1186/gb-2004-5-11-r90 |
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