Table 4

Candidate binding sites for the nickel regulator NikR

Gene

Operon

Function

Site

Orientation

Position*

Score


Geobacter sulfurreducens PCA

381565

nik(MN)QO*

Nickel transporter

GTGTTAC-[N14]-GTgACAC

→←

-183

5.00

Geobacter metallireducens

379930

nik(MN)QO*

Nickel transporter

GTGTTAC-[N13]-GTAACAC

→←

-63

5.22

Desulfuromonas species

387207

nikQO*

Nickel transporter

GTGccAC-[N13]-GTAACAC

→←

-41

4.67

Desulfovibrio vulgaris

206492

nikMQO*

Nickel transporter

GTGTTAt-[N13]-GTAACAC

→←

-120

5.00

208275

nikK*

Additional component of Ni transporter

GTgACAC-[N13]-GTGTaAC

←→

-84

4.49

Desulfovibrio desulfuricans

395510

nikKMLQO*

Nickel transporter

GTGTTAt-[N13]-GTAACAC

→←

-104

5.00

394565

hydAB

Periplasmic Fe-only hydrogenase

GTaTTAC-[N13]-GTAACAC

→←

-83

4.67

Desulfotalea psychrophila

422915

nikMLKQO*

Nickel transporter

GTAACAC-[N13]-GTGTTAC

←→

-20

5.22

422176

422176-177

?

GTAACAC-[N13]-GTGTTAC

←→

-197

5.22

GTAACAC-[N13]-GTGTTAC

←→

-124

5.22


*Position relative to the start of translation.

Rodionov et al. Genome Biology 2004 5:R90   doi:10.1186/gb-2004-5-11-r90

Open Data