Table 7

Candidate binding sites for the peroxide-responsive regulators PerR

Gene

Operon

Function

Site

Position*

Score


Desulfovibrio vulgaris

207805

rbr2

Rubrerythrin

AATAGGAATCGTTCCTGTT

-46

5.97

208612

perR-rbr-rdl

PerR-like repressor, rubrerythrin, rubredoxin

AtCAGTAATtGTTACTGgT

-36

5.50

207732

ahpC

Alkyl hydroperoxide reductase C

cACAGGAATGATTCCTGTT

-116

5.40

206199

?

AtCAGTAATaGTTAtTGTT

-124

5.39

Desulfovibrio desulfuricans

395420

rbr2

Rubrerythrin

AATAGGAATCGTTACTGaT

-76

5.91

395549

?

AATAaGAATtGTTACTATT

-134

5.45

393457

perR

PerR-like repressor

ttTAGGAATGGTTAtTATT

-41

5.23

Desulfotalea psychrophila

423938

roo1-roo2

Rubredoxin-oxygen oxidoreductase

GTTAATGATAATCATTAct

-203

6.25

425393

perR

PerR-like repressor

GaTAATttTTATtATTAAC

-74

5.97

Geobacter sulfurreducens

383613

perR-rbr*-roo

Rubredoxin-oxygen oxidoreductase

AaTGCAATAAAATACCAAT

-99

6

Geobacter metallireducens

378323

perR2-rbr*-roo

Rubredoxin-oxygen oxidoreductase

ATTGCAATAAAgTACCAAc

-99

5.79

Desulfuromonas species

387528

katG1

Catalase

 GGTcTTGACAATtCC

-75

5.55

387530

perR31

PerR-like repressor

 GaTATTGACAAacCC

-96

5.29

Geobacter sulfurreducens

383124

hsc-grx-ccpA-rbr

Cytochrome peroxidase, glutaredoxin, rubrerythrin

TTGCGCATTCcATtCGTAA

-32

5.84

Desulfuromonas species

390120

perR1-rbr

PerR-like repressor, rubrerythrin

TTGCGCgTTAAAacaGTAA

-91

5.54


*Position relative to the start of translation. Lower case letters represent positions that do not conform to the consensus sequence.

Rodionov et al. Genome Biology 2004 5:R90   doi:10.1186/gb-2004-5-11-r90

Open Data