Table 8

Candidate CIRCE sites for the heat shock-responsive regulator HrcA

Gene

Operon

Site

Position*

Score


Desulfovibrio vulgaris

207448

groESL

cTgGCACTC-[N9]-GAGTGCcAA

-68

6.53

Desulfovibrio desulfuricans

394393

groESL

TTgGCACTC-[N9]-GAGTGCTAA

-70

7.15

Geobacter sulfurreducens

380317

hrcA-grpE-dnaK-dnaJ

TTAGCACTC-[N9]-GAGTGCTAA

-49

7.50

380945

rpoH

TTAGCACTC-[N9]-GAGTGCTAA

-51

7.28

383663

groESL

TTAGCACTC-[N9]-GAGTGCTAA

-81

7.45

Geobacter metallireducens

379288

groESL

TTAGCACTC-[N9]-GAGTGCTAA

-80

7.41

379629

hrcA-grpE-dnaK-dnaJ

TTAGCACTC-[N9]-GAGTGCTAA

-45

7.29

Desulfuromonas species

387711

hrcA-grpE-dnaK-dnaJ

TTAGCACTC-[N9]-GAGTGCTAA

-85

7.06

389722

groESL

TTAGCACTC-[N9]-GAGTGCTAA

-99

7.20


*Position relative to the start of translation. Lower case letters represent positions that do not conform to the consensus sequence.

Rodionov et al. Genome Biology 2004 5:R90   doi:10.1186/gb-2004-5-11-r90

Open Data