Table 9

Candidate σ32-dependent promoters upstream of heat-shock genes

Gene

Operon

Site

Position*

Score


Desulfovibrio vulgaris

206437

dnaJ-?-clpA

gaTGAAt-[N15]-CCCCtT

-114

5.43

206776

?-clp

gTTGttg-[N15]-CCCCgT

-196

5.28

207035

rpoH

aTTGAAA-[N12]-aaCtAT

-110

5.71

207448

groESL

CaTaAAA-[N12]-CCCCtT

-239

5.23

Desulfovibrio desulfuricans

394616

clpP-clpX-lon

CTTGAAc-[N12]-CCCgAT

-82

6.45

394617

clpX

CTTGAAA-[N14]-aCCgAT

-136

6.94

394712

rpoH

aTTGAAA-[N12]-aaCtAT

-122

5.71

395109

dnaJ-?-clpA

CTTGAAA-[N13]-gaCggT

-81

5.16

gTTGcAg-[N12]-CCgCAT

-57

5.28

395651

dnaK

CTcGAAA-[N14]-CCgCAg

-71

5.17

Desulfotalea psychrophila

422219

groESL

aTTGAAA-[N13]-CCCCtT

-201

6.33

CTTGAtt-[N13]-aCCtAT

-134

5.98

423932

grpE-dnaK

CaTGAAc-[N12]-CtCCAT

-232

5.34

CTTGAcA-[N13]-aCttAT

-135

5.67

424328

dnaJ

gTTtAcA-[N14]-gCCCAT

-113

5.62

CTTGAct-[N14]-CCCtAa

-40

5.67

425016

?-clpP-clpX-lon

tTTGAtA-[N11]-CCCaAg

-123

5.33

Geobacter sulfurreducens

380319

dnaK-dnaJ

gTTGAgg-[N14]-CCCaAT

-208

6.05

382089

?-clpP-clpX-lon

gTTcAAA-[N12]-CCCCAT

-283

6.65

382697

htpG

CTTGAAA-[N11]-CatgAT

-75

5.85

Geobacter metallireducens

379288

groESL

gaTGAAA-[N12]-aCtCAT

-45

5.79

379647

clpA

CTTGAct-[N14]-gCCtAT

-58

5.72

379699

?-clpP-clpX-lon

gTTcAAA-[N13]-CCCaAT

-280

5.96

Desulfuromonas species

388073

clpP-clpX-lon

CTTGAAg-[N14]-gCCaAT

-203

6.41

aTTGAAg-[N14]-aCCtAT

-110

6.20

389722

groESL

gTTGAgA-[N14]-CCCCtT

-163

5.91


*Position relative to the start of translation. Lower case letters represent positions that do not conform to the consensus sequence.

Rodionov et al. Genome Biology 2004 5:R90   doi:10.1186/gb-2004-5-11-r90

Open Data