Table 9 |
||||
|
Candidate σ32-dependent promoters upstream of heat-shock genes |
||||
|
Gene |
Operon |
Site |
Position* |
Score |
|
|
||||
|
Desulfovibrio vulgaris |
||||
|
206437 |
dnaJ-?-clpA |
gaTGAAt-[N15]-CCCCtT |
-114 |
5.43 |
|
206776 |
?-clp |
gTTGttg-[N15]-CCCCgT |
-196 |
5.28 |
|
207035 |
rpoH |
aTTGAAA-[N12]-aaCtAT |
-110 |
5.71 |
|
207448 |
groESL |
CaTaAAA-[N12]-CCCCtT |
-239 |
5.23 |
|
Desulfovibrio desulfuricans |
||||
|
394616 |
clpP-clpX-lon |
CTTGAAc-[N12]-CCCgAT |
-82 |
6.45 |
|
394617 |
clpX |
CTTGAAA-[N14]-aCCgAT |
-136 |
6.94 |
|
394712 |
rpoH |
aTTGAAA-[N12]-aaCtAT |
-122 |
5.71 |
|
395109 |
dnaJ-?-clpA |
CTTGAAA-[N13]-gaCggT |
-81 |
5.16 |
|
gTTGcAg-[N12]-CCgCAT |
-57 |
5.28 |
||
|
395651 |
dnaK |
CTcGAAA-[N14]-CCgCAg |
-71 |
5.17 |
|
Desulfotalea psychrophila |
||||
|
422219 |
groESL |
aTTGAAA-[N13]-CCCCtT |
-201 |
6.33 |
|
CTTGAtt-[N13]-aCCtAT |
-134 |
5.98 |
||
|
423932 |
grpE-dnaK |
CaTGAAc-[N12]-CtCCAT |
-232 |
5.34 |
|
CTTGAcA-[N13]-aCttAT |
-135 |
5.67 |
||
|
424328 |
dnaJ |
gTTtAcA-[N14]-gCCCAT |
-113 |
5.62 |
|
CTTGAct-[N14]-CCCtAa |
-40 |
5.67 |
||
|
425016 |
?-clpP-clpX-lon |
tTTGAtA-[N11]-CCCaAg |
-123 |
5.33 |
|
Geobacter sulfurreducens |
||||
|
380319 |
dnaK-dnaJ |
gTTGAgg-[N14]-CCCaAT |
-208 |
6.05 |
|
382089 |
?-clpP-clpX-lon |
gTTcAAA-[N12]-CCCCAT |
-283 |
6.65 |
|
382697 |
htpG |
CTTGAAA-[N11]-CatgAT |
-75 |
5.85 |
|
Geobacter metallireducens |
||||
|
379288 |
groESL |
gaTGAAA-[N12]-aCtCAT |
-45 |
5.79 |
|
379647 |
clpA |
CTTGAct-[N14]-gCCtAT |
-58 |
5.72 |
|
379699 |
?-clpP-clpX-lon |
gTTcAAA-[N13]-CCCaAT |
-280 |
5.96 |
|
Desulfuromonas species |
||||
|
388073 |
clpP-clpX-lon |
CTTGAAg-[N14]-gCCaAT |
-203 |
6.41 |
|
aTTGAAg-[N14]-aCCtAT |
-110 |
6.20 |
||
|
389722 |
groESL |
gTTGAgA-[N14]-CCCCtT |
-163 |
5.91 |
|
|
||||
|
*Position relative to the start of translation. Lower case letters represent positions that do not conform to the consensus sequence. |
||||
|
Rodionov et al. Genome Biology 2004 5:R90 doi:10.1186/gb-2004-5-11-r90 |
||||
