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Open Access Method

Estimating genomic coexpression networks using first-order conditional independence

Paul M Magwene12* and Junhyong Kim1

Author Affiliations

1 Department of Biology, University of Pennsylvania, 415 S University Avenue, Philadelphia, PA 19104, USA

2 Current address: Department of Biology, Duke University, Durham, NC 27708, USA

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Genome Biology 2004, 5:R100  doi:10.1186/gb-2004-5-12-r100

Published: 30 November 2004

Additional files

Additional data file 1:

Supplementary figures illustrating the connectivity distribution (on a log-log scale) of the estimated yeast FOCI network and additional examples of coherent subgraphs of the FOCI network generated by querying with known metabolic pathways

Format: PDF Size: 136KB Download file

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Open Data

Additional data file 2:

A table detailing each of the 32 locally distinct subgraphs generated from the yeast FOCI network via the unsupervised graph search algorithm described in the text

Format: PDF Size: 81KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data