GOToolBox: functional analysis of gene datasets based on Gene Ontology
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* Corresponding author: David Martin martin@ibdm.univ-mrs.fr
Genome Biology 2004, 5:R101 doi:10.1186/gb-2004-5-12-r101
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Method
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Methodology article
Assessment of protein set coherence using functional annotations Monica Chagoyen, Jose M Carazo, Alberto Pascual-Montano BMC Bioinformatics 2008, 9:444 (20 October 2008) A novel approach to evaluating the homogeneity of protein sets on the basis of the global similarity of their Gene Ontology functional annotations compliments methods for validating microarray clusters and protein-protein interaction networks.
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Method
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Software
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Software
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A literature-based similarity metric for biological processes Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, Jose M Carazo, Alberto Pascual-Montano BMC Bioinformatics 2006, 7:363 (26 July 2006) |
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Research
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Method
Large-scale gene discovery in the pea aphid Acyrthosiphon pisum (Hemiptera) Beatriz Sabater-Muñoz, Fabrice Legeai, Claude Rispe, Joël Bonhomme, Peter Dearden, Carole Dossat, Aymeric Duclert, Jean-Pierre Gauthier, Danièle Ducray, Wayne Hunter, Phat Dang, Srini Kambhampati, David Martinez-Torres, Teresa Cortes, Andrès Moya, Atsushi Nakabachi, Cathy Philippe, Nathalie Prunier-Leterme, Yvan Rahbé, Jean-Christophe Simon, David L Stern, Patrick Wincker, Denis Tagu Genome Biology 2006, 7:R21 (10 March 2006) A large-scale sequencing analysis of the Hemiptera |
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Database
The Gene Set Builder: collation, curation, and distribution of sets of genes Dimas Yusuf, Jonathan S Lim, Wyeth W Wasserman BMC Bioinformatics 2005, 6:305 (21 December 2005) |
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Methodology article
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