Table 1

Arabidopsis snRNA genes

Gene

GeneID

Chromosome

Strand

From

To

Length (nucleotides)

e-value

Similarity

GenBank ID


atU1a*

At5g49054

5

-

19903323

19903158

166

1E-89

1-166, 100%

gi17660

atU1-2

At4g23415

4

+

12225621

12225786

166

1E-58

1-166, 92%

gi22293582

atU1-3

At5g51675

5

+

21013986

21014149

164

4E-55

3-166, 91%

atU1-4

At5g25774

5

-

8972971

8972807

165

2E-51

1-166, 90%

gi22293583

atU1-5

At1g08115

1

-

2538238

2538073

166

1E-46

1-166, 89%

gi22293581

atU1-6

At3g05695

3

+

1681815

1681977

163

4E-40

4-166, 87%

atU1-7

At3g05672

3

+

1657766

1657928

163

4E-40

4-166, 87%

gi22293580

atU1-8

At5g27764

5

+

9832576

9832740

165

1E-39

1-166, 87%

atU1-9

At5g26694

5

-

9494594

9494430

165

1E-27

1-166, 84%

atU1-10

At1g11884

1

-

4007396

4007236

161

1E-18

4-61, 93%; 80-166, 88%

atU1-11p

At4g16645

4

+

9370786

9370841

56

7E-17

4-59, 94%

atU1-12p

At4g23565

4

-

12298871

12298802

70

1E-15

94-163, 90%

atU1-13p

At5g49524

5

-

20112431

20112275

157

2E-14

4-50, 91%; 91-166, 88%

atU1-14p

At1g35354

1

+

12986822

12986908

87

1E-06

10-60, 88%; 84-118, 88%

atU2-1

At1g16825

1

+

5758381

5758575

195

2E-88

1-196, 96%

atU2.2*

At3g57645

3

+

21357718

21357913

196

1E-107

1-196, 100%

gi17661

atU2.3

At3g57765

3

-

21408595

21408400

196

1E-95

1-196, 97%

gi17662

atU2.4

At3g56825

3

-

21052994

21052800

195

5E-86

1-196, 95%

gi17663

atU2.5

At5g09585

5

+

2975013

2975208

196

7E-79

1-196, 93%

gi17664

atU2.6

At3g56705

3

+

21015472

21015667

196

1E-83

1-196, 94%

gi17665

atU2.7

At5g61455

5

-

24730829

24730634

196

5E-86

1-196, 95%

gi17666

atU2-8

At5g67555

5

+

26966884

26967079

196

5E-86

1-196, 95%

atU2.9

At4g01885

4

+

815273

815466

194

2E-82

1-194, 94%

gi17667

atU2-10

At2g02938

2

+

849777

849972

196

3E-93

1-196, 96%

gi22293586

atU2-10b/12

At2g02940

2

+

852859

853054

196

3E-93

1-196, 96%

atU2-11

At1g09805/09895

1

-

3180736

3180547

190

8E-85

1-190, 95%

atU2-13

At2g20405

2

+

8809169

8809364

196

3E-81

1-196, 94%

gi22293584

atU2-14

At1g14165

1

+

4842274

4842469

196

3E-81

1-196, 94%

gi22293585

atU2-15

At5g62415

5

+

25083790

25083985

196

4E-74

1-196, 92%

atU2-16

At5g57835

5

-

23448717

23448522

196

2E-67

1-196, 92%

atU2-17

At5g14545

5

-

4690105

4690008

98

3E-44

1-98, 97%

atU2-18p

At3g26815

3

+

9881236

9881303

68

2E-14

1-68, 89%

atU4.1*

At5g49056

5

-

19902970

19902817

154

4E-80

1-154, 99%

gi17673

atU4.2

At3g06900

3

-

2178343

2178190

154

2E-75

1-154, 98%

gi17674

atU4.3p

At5g49526

5

-

20112072

20112030

43

2E-11

15-57, 95%

gi17675

atU4-4

At1g49242/49235

1

-

18222354

18222201

154

2E-75

1-154, 98%

gi22293588

atU4-5

At5g25776

5

-

8972618

8972465

154

1E-70

1-154, 96%

atU4-6

At1g11886

1

-

4007020

4006867

154

1E-70

1-154, 96%

gi22293587

atU4-7

At5g27766

5

+

9832934

9833083

150

7E-66

1-150, 96%

atU4-8

At5g26996

5

-

9494230

9494081

150

7E-66

1-150, 96%

atU4-9

At1g79965

1

+

30086031

30086168

138

9E-47

18-154, 92%

atU4-10

At1g35356

1

+

12987189

12987313

125

3E-34

1-124, 90%

atU4-11p

At1g68395

1

+

25647322

25647396

75

9E-07

18-37, 100%; 60-102, 90%

atU5.1*

At3g55865

3

-

20740607

20740503

105

6E-35

1-105, 94%

gi17676

atU5.1b

At3g55855

3

-

20736881

20736780

102

7E-38

1-102, 96%

gi22293592

atU5-2

At1g65115

1

+

24194482

24194586

105

1E-39

1-105, 96%

atU5-3

At1g70185

1

+

26433396

26433497

102

7E-38

1-102, 96%

gi22293590

atU5-4

At3g55645

3

+

20653843

20653947

105

3E-37

1-105, 95%

atU5-5

At1g24105/24095

1

-

8525204

8525103

102

2E-35

1-102, 95%

gi22293591

atU5-6

At1g04475

1

-

1215831

1215730

102

2E-35

1-102, 95%

gi22293589

atU5-7

At4g02535

4

-

1114629

1114528

102

1E-30

2-103, 93%

atU5-8

At3g25445

3

-

9227212

9227116

97

1E-20

5-101, 89%

atU5-9

At1g79545

1

-

29928543

29928447

97

1E-20

5-101, 89%

atU5-10

At5g14547

5

-

4690412

4690370

43

3E-12

24-67, 97%

atU5-11

At5g54065

5

-

21957066

21957023

44

2E-10

20-64, 95%

atU5-12

At1g71355

1

+

26895255

26895298

44

2E-10

20-64, 95%

atU5-13

At5g53745

5

-

21829988

21829943

46

3E-09

24-70, 93%

atU6.1*

At3g14735

3

+

4951596

4951697

102

1E-51

1-102, 100%

gi16516

atU6.26

At3g13855

3

+

4561111

4561212

102

2E-49

1-102, 99%

gi16517

atU6.29

At5g46315

5

+

18804616

18804717

102

2E-49

1-102, 99%

gi16518

atU6-2

At5g62995

5

+

25296825

25296926

102

1E-51

1-102, 100%

atU6-3

At4g27595

4

+

13782215

13782316

102

1E-51

1-102, 100%

atU6-4

At4g03375

4

-

1483121

1483020

102

1E-51

1-102, 100%

atU6-5

At4g33085

4

-

15965258

15965158

101

8E-37

1-101, 94%

atU6-6

At4g35225

4

+

16754836

16754931

96

1E-32

1-102, 93%

atU6-7

At2g15532

2

+

6784793

6784869

77

7E-25

4-80, 93%

atU6-8p

At1g52605

1

+

19596398

19596476

96

2E-19

4-99, 87%

atU6-9p

At1g53465

1

-

19960538

19960485

54

9E-09

21-74, 88%

atU6-10p

At3g45705

3

+

16792802

16792888

87

2E-06

1-46, 89%; 62-100, 89%

atU6-11p

At5g11085

5

-

3522167

3522143

25

9E-06

1-25, 100%

atU12*

At1g61275

1

+

22606785

22606960

176

1E-95

1-176, 100%

gi22293600

atU6atac*

At5g40395

5

-

16183534

16183413

122

1E-63

1-122, 100%

atU6atac-2

At1g21395

1

-

7491489

7491378

112

5E-20

1-65, 95%; 81-110, 93%

atU4atac

At4g16065

4

+

9096374

9096532

159

N/A

N/A


Chromosomal locations were determined by conducting BLAST searches against the Arabidopsis genome (Release 5.0). *The gene used for query in the BLAST search; atU12 and atU6atac sequences, which were experimentally identified [28]. Their sequences were compiled manually from the cited paper. The GenBank gi numbers for the chromosome sequences used are as follows: chromosome 1, 42592260; chromosome 2, 30698031; chromosome 3, 30698537; chromosome 4, 30698542; chromosome 5, 30698605.

Wang and Brendel Genome Biology 2004 5:R102   doi:10.1186/gb-2004-5-12-r102

Open Data