Research
Integrating phenotypic and expression profiles to map arsenic-response networks
1 Laboratory of Molecular Genetics, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC 27709, USA
2 Department of Bioengineering, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0412, USA
3 National Center for Toxicogenomics, Microarray Center, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC 27709, USA
4 Department of Radiation Oncology, Stanford University School of Medicine, 269 Campus Drive West, Stanford, CA 94305, USA
Genome Biology 2004, 5:R95 doi:10.1186/gb-2004-5-12-r95
Published: 29 November 2004Additional files
Additional data file 1:
The dose-response curve of S. cerevisiae strain, BY4741
Format: PDF Size: 15KB Download file
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Additional data file 2:
A self-organized tree of arsenite treated yeast experiments and a table depicting the numbers of significant genes
Format: PDF Size: 77KB Download file
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Additional data file 3:
The primary raw cDNA data from all the experiments
Format: TXT Size: 335KB Download file
Additional data file 4:
The primary raw data for all the deletion experiments
Format: TXT Size: 539KB Download file
Additional data file 5:
The ranked arsenite sensitivity (phenotypic profiling) data
Format: XLS Size: 1.7MB Download file
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Additional data file 6:
Genes two-fold or more differentially expressed after arsenite in the Yap1 deletion strain compared to the parent
Format: XLS Size: 71KB Download file
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Additional data file 7:
Genes two-fold or more differentially expressed after arsenite in the Cad1 deletion strain compared to the parent
Format: XLS Size: 27KB Download file
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Additional data file 8:
Genes failing to be induced or repressed by arsenite in the Yap1 deleted strain
Format: XLS Size: 99KB Download file
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Additional data file 9:
Genes failing to be induced or repressed by arsenite in the Cad1 deleted strain
Format: XLS Size: 30KB Download file
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Additional data file 10:
Under arsenite-treated conditions, Yap1 might regulate Arr2 and Arr3, and does not regulate Rpn4
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Additional data file 11:
Genes two-fold or more differentially expressed after arsenite in the Rpn4 deletion strain compared to the parent
Format: XLS Size: 150KB Download file
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Additional data file 12:
Genes failing to be induced or repressed by arsenite in the Rpn4 deleted strain
Format: XLS Size: 153KB Download file
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Additional data file 13:
Genes two-fold or more differentially expressed after arsenite in the Arr1 deletion strain compared to the parent
Format: XLS Size: 291KB Download file
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Additional data file 14:
Genes failing to be induced or repressed by arsenite in the Arr1 deleted strain
Format: XLS Size: 332KB Download file
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Additional data file 15:
Self-organized clustering of deletion strains with AsIII treatment and parent strain vs. deletion strains without arsenic
Format: PDF Size: 77KB Download file
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Additional data file 16:
Gene list of two-fold differential expression in yap1Δ vs. parent without arsenic treatment
Format: XLS Size: 19KB Download file
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Additional data file 17:
Gene list of two-fold differential expression in cad1Δ vs. parent without arsenic treatment
Format: XLS Size: 17KB Download file
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Additional data file 18:
Gene list of two-fold differential expression in rpn4Δ vs. parent without arsenic treatment
Format: XLS Size: 79KB Download file
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Additional data file 19:
Gene list of two-fold differential expression in arr1Δ vs. parent without arsenic treatment
Format: XLS Size: 52KB Download file
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Additional data file 20:
A file of all the genes mentioned in the paper
Format: XLS Size: 29KB Download file
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