A Drosophila protein-interaction map centered on cell-cycle regulators
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* Corresponding author: Russell L Finley rfinley@wayne.edu
Genome Biology 2004, 5:R96 doi:10.1186/gb-2004-5-12-r96
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BioMed Central: 12 citations
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Review
Evolution of biological interaction networks: from models to real data Mark GF Sun, Philip M Kim Genome Biology 2011, 12:235 (28 December 2011) Sun and Kim review progress in the study of biological network evolution, with a focus on the protein-protein interaction network
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Research
Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function James C Costello, Mehmet M Dalkilic, Scott M Beason, Jeff R Gehlhausen, Rupali Patwardhan, Sumit Middha, Brian D Eads, Justen R Andrews Genome Biology 2009, 10:R97 (16 September 2009) The first computational interaction network built from |
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Research article
Carlo G Artieri, Wilfried Haerty, Rama S Singh BMC Biology 2009, 7:42 (21 July 2009) Von Baer and Darwin's developmental constraint hypotheses gain support from comparing fruit fly genes across six species, as early-expressed genes are constrained and have more interactions, and adult male gonad genes diverge the most, under positive selection.
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Database
Jingkai Yu, Svetlana Pacifico, Guozhen Liu, Russell L Finley BMC Genomics 2008, 9:461 (7 October 2008) |
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Research article
Defining a Modular Signalling Network from the Fly Interactome Anaïs Baudot, Jean-Baptiste Angelelli, Alain Guénoche, Bernard Jacq, Christine Brun BMC Systems Biology 2008, 2:45 (19 May 2008) |
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Research
A proteome-wide protein interaction map for Campylobacter jejuni Jodi R Parrish, Jingkai Yu, Guozhen Liu, Julie A Hines, Jason E Chan, Bernie A Mangiola, Huamei Zhang, Svetlana Pacifico, Farshad Fotouhi, Victor J DiRita, Trey Ideker, Phillip Andrews, Russell L Finley Genome Biology 2007, 8:R130 (5 July 2007) 'Systematic identification of protein interactions for the bacterium |
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Software
FlyMine: an integrated database for Drosophila and Anopheles genomics Rachel Lyne, Richard Smith, Kim Rutherford, Matthew Wakeling, Andrew Varley, Francois Guillier, Hilde Janssens, Wenyan Ji, Peter Mclaren, Philip North, Debashis Rana, Tom Riley, Julie Sullivan, Xavier Watkins, Mark Woodbridge, Kathryn Lilley, Steve Russell, Michael Ashburner, Kenji Mizuguchi, Gos Micklem Genome Biology 2007, 8:R129 (5 July 2007) This novel web-based database provides unique accessibility and querying of integrated genomic and proteomic data for |
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Methodology article
Reconstruction of human protein interolog network using evolutionary conserved network Tao-Wei Huang, Chung-Yen Lin, Cheng-Yan Kao BMC Bioinformatics 2007, 8:152 (10 May 2007) |
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Proceedings
Fly-DPI: database of protein interactomes for D. melanogaster in the approach of systems biology Chung-Yen Lin, Shu-Hwa Chen, Chi-Shiang Cho, Chia-Ling Chen, Fan-Kai Lin, Chieh-Hua Lin, Pao-Yang Chen, Chen-Zen Lo, Chao A Hsiung BMC Bioinformatics 2006, 7(Suppl 5):S18 (18 December 2006) |
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Research article
QPath: a method for querying pathways in a protein-protein interaction network Tomer Shlomi, Daniel Segal, Eytan Ruppin, Roded Sharan BMC Bioinformatics 2006, 7:199 (10 April 2006) |
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Database
Svetlana Pacifico, Guozhen Liu, Stephen Guest, Jodi R Parrish, Farshad Fotouhi, Russell L Finley BMC Bioinformatics 2006, 7:195 (7 April 2006) |
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Software
Ulysses - an application for the projection of molecular interactions across species Danielle Kemmer, Yong Huang, Sohrab P Shah, Jonathan Lim, Jochen Brumm, Macaire MS Yuen, John Ling, Tao Xu, Wyeth W Wasserman, BF Francis Ouellette Genome Biology 2005, 6:R106 (2 December 2005) Ulysses, a new software for the parallel analysis and display of protein interactions detected in various species, is described. |