Method
MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model
1 Graduate Group in Biophysics, University of California, Berkeley, CA 94720, USA
2 Center for Integrative Genomics, University of California, Berkeley, CA 94720
3 Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA
4 Department of Genome Sciences, Genomics Division, Ernest Orlando Lawrence Berkeley National Lab, 1 Cyclotron Road, CA 942770, USA
Genome Biology 2004, 5:R98 doi:10.1186/gb-2004-5-12-r98
Published: 30 November 2004Additional files
Additional data file 1:
The fraction of binding sites that are not conserved for several different S. cerevisiae transcription factors
Format: PDF Size: 41KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 2:
The conservation p-values of predicted binding sites in high-density binding site clusters in the Drosophila melanogaster genome, with the binding sites grouped according to whether the cluster has regulatory activity
Format: PDF Size: 41KB Download file
This file can be viewed with: Adobe Acrobat Reader
