Figure 5.

Full grid depiction of high-confidence predictions. Correct predictions are colored green (TP) or grey (TN) whereas incorrect predictions are colored yellow (FN) or blue (FP). White boxes represent pairs of sequences that are not classified as strong interactions or non-interactions. A point is 'positive' if its score using the base-optimized weights is greater than 32.8. A point is 'negative' if its score is lower than 27.8. Strong interactions and non-interactions are as defined in Methods. The sequences are grouped by similarity, and are numbered as in Table 1 of Additional data file 1. The families, separated by the gridlines, are ordered as follows: C/EBP, sequences 1-7; CREB, 8-11; OASIS, 12-15; ATF-6, 16-17; XBP, 18; E4BP4, 19; ATF-2, 20-22; JUN, 23-25; FOS, 26-29; ATF-3, 30; ATF-4, 31-33; B-ATF, 34-35; PAR, 36-38; smMAF, 39-40; lgMAF, 41-42; CNC, 43-48; and YEAST, 49-58.