Table 1 |
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|
NMD-candidate SWISS-PROT isoforms |
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| Accession number |
SWISS-PROT ID |
Isoform name |
Gene name(s) |
cDNA/mRNA |
|
|
||||
| P78314 |
3BP2_HUMAN |
SHORT |
SH3BP2; 3BP2; RES4-23 |
AB000463 |
| P05023 |
A1A1_HUMAN |
SHORT |
ATP1A1 |
U16798 |
| Q9NSE7 |
ABCD_HUMAN |
2 |
ABCC13 |
AF418600 |
| 3 |
NM_138726 |
|||
| O75078 |
AD11_HUMAN |
SHORT |
ADAM11; MDC |
NM_021612 |
| Q9P0K1 |
AD22_HUMAN |
2 |
ADAM22; MDC2 |
NM_021722 |
| Q9Y6N9 |
AI75_HUMAN |
3 |
USH1C; AIE75 |
AF039699 |
| Q92667 |
AKP1_HUMAN |
2 |
AKAP1; AKAP149 |
NM_139275 |
| P20594 |
ANPB_HUMAN |
SHORT |
NPR2; ANPRB |
NM_000907 |
| P18847 |
ATF3_HUMAN |
2 |
ATF3 |
NM_004024 |
| Q9H6X2 |
ATR1_HUMAN |
MAJOR |
ANTXR1; ATR; TEM8 |
NM_032208 |
| Q9NY97 |
B3G7_HUMAN |
2 |
B3GNT1; B3GALT7 |
AF288209 |
| Q9HB09 |
BC12_HUMAN |
2 |
BCL2L12; BPR |
NM_052842 |
| P13497 |
BMP1_HUMAN |
BMP1 6 |
BMP1 |
NM_006130 |
| BMP1 5 |
NM_006131 |
|||
| BMP1 4 |
NM_006132 |
|||
| Q9HB55 |
C343_HUMAN |
4 |
CYP3A43 |
AF280111 |
| P01258 |
CAL0_HUMAN |
2 |
CALCA; CALC1 |
M64486 |
| Q9HC96 |
CANA_HUMAN |
B |
CAPN10; KIAA1845 |
NM_023084 |
| D |
NM_023086 |
|||
| E |
NM_023087 |
|||
| F |
NM_023088 |
|||
| P28907 |
CD38_HUMAN |
2 |
CD38 |
D84277 |
| Q08722 |
CD47_HUMAN |
OA3 305 |
CD47 |
BC037306 |
| O15519 |
CFLA_HUMAN |
9 |
CFLAR; CLARP; MRIT; CASH |
AF009617 |
| Q9H2X0 |
CHRD_HUMAN |
3 |
CHRD |
AF209930 |
| 4 |
AF283325 |
|||
| O43526 |
CIQ2_HUMAN |
3 |
KCNQ2 |
NM_004518 |
| Q9NYG8 |
CIW4_HUMAN |
2 |
KCNK4; TRAAK |
NM_016611 |
| P49759 |
CLK1_HUMAN |
SHORT |
CLK1; CLK |
L29222 |
| P49760 |
CLK2_HUMAN |
SHORT |
CLK2 |
NM_001291 |
| P49761 |
CLK3_HUMAN |
2 |
CLK3 |
NM_001292 |
| Q13286 |
CLN3_HUMAN |
4 |
CLN3; BTS |
AF077963 |
| Q99788 |
CML1_HUMAN |
MAJOR |
CMKLR1; DEZ; CHEMR23 |
U79526 |
| P27815 |
CN4A_HUMAN |
2 |
PDE4A |
AF069491 |
| Q9H9E3 |
COG4_HUMAN |
2 |
COG4 |
AB088369 |
| Q9Y215 |
COLQ_HUMAN |
VII |
COLQ |
NM_080543 |
| Q96SM3 |
CPXM_HUMAN |
2 |
CPXM |
BC032692 |
| Q9BZJ0 |
CRN1_HUMAN |
4 |
CRNKL1; CRN |
AF318304 |
| 5 |
AF318305 |
|||
| Q9BUV8 |
CT24_HUMAN |
4 |
C20ORF24 |
BC004446 |
| P57077 |
CU07_HUMAN |
B |
C21ORF7 |
AF269162 |
| C |
AF269163 |
|||
| Q9NVD3 |
CU18_HUMAN |
B |
C21ORF18 |
AF391112 |
| Q92879 |
CUG1_HUMAN |
MAJOR |
CUGBP1; BRUNOL2; CUGBP; NAB50 |
AF248648 |
| O76075 |
DFFB_HUMAN |
BETA |
DFFB; DFF2; DFF40; CAD |
AB028911 |
| GAMMA |
AB028912 |
|||
| DELTA |
AB028913 |
|||
| P25686 |
DJB2_HUMAN |
3 |
DNAJB2; HSJ1; HSPF3 |
NM_006736 |
| MAJOR |
S37374 |
|||
| Q09013 |
DMK_HUMAN |
11 |
DMPK; MDPK |
L19268 |
| Q9NYP3 |
DONS_HUMAN |
2 |
DONSON; C21ORF60 |
NM_145794 |
| 3 |
NM_145795 |
|||
| Q9NY33 |
DPP3_HUMAN |
2 |
DPP3 |
NM_130443 |
| O60941 |
DTNB_HUMAN |
3 |
DTNB |
NM_033147 |
| P29320 |
EPA3_HUMAN |
MAJOR |
EPHA3; ETK1; ETK; HEK |
NM_005233 |
| O75616 |
ERAL_HUMAN |
HERA B |
ERAL1; HERA |
AF082658 |
| Q92731 |
ESR2_HUMAN |
3 |
ESR2; NR3A2; ESTRB |
BC024181 |
| O00507 |
FAFY_HUMAN |
SHORT |
USP9Y; USP10; DFFRY |
Y13619 |
| P24071 |
FCAR_HUMAN |
B DELTA S2 |
FCAR; CD89 |
NM_133280 |
| P41439 |
FOL3_HUMAN |
SHORT |
FOLR3 |
Z32633 |
| O95954 |
FTCD_HUMAN |
E |
FTCD |
AF289024 |
| P59103 |
G72_HUMAN |
MAJOR |
G72 |
AY138546 |
| 2 |
NM_172370 |
|||
| Q9UBA6 |
G8_HUMAN |
MAJOR |
C6ORF48; G8 |
NM_016947 |
| Q9UBS5 |
GBR1_HUMAN |
1E |
GABBR1 |
NM_021905 |
| Q9BSJ2 |
GCP2_HUMAN |
2 |
TUBGCP2; GCP2 |
BC005011 |
| P56159 |
GDNR_HUMAN |
2 |
GFRA1; GDNFRA; TRNR1; RETL1 |
NM_145793 |
| O94925 |
GLSK_HUMAN |
GAC |
GLS; KIAA0838 |
AF158555 |
| Q969S8 |
HD10_HUMAN |
4 |
HDAC10 |
AL022328 |
| Q30201 |
HFE_HUMAN |
MAJOR |
HFE; HLAH |
NM_000410 |
| Q9NRM6 |
I17S_HUMAN |
2 |
IL17RB; IL17BR; EVI27 |
NM_172234 |
| Q14790 |
ICE8_HUMAN |
7 |
CASP8; MCH5 |
NM_033357 |
| Q92851 |
ICEA_HUMAN |
B |
CASP10; MCH4 |
NM_001230 |
| C |
NM_032976 |
|||
| Q92985 |
IRF7_HUMAN |
C |
IRF7 |
NM_004030 |
| Q01638 |
IRL1_HUMAN |
C |
IL1RL1; ST2; T1; DER4 |
NM_173459 |
| O14713 |
ITP1_HUMAN |
MAJOR |
ITGB1BP1; ICAP1 |
NM_004763 |
| 2 |
NM_022334 |
|||
| Q9HCP0 |
KC11_HUMAN |
1S |
CSNK1G1 |
NM_022048 |
| P20151 |
KLK2_HUMAN |
3 |
KLK2 |
AF188745 |
| Q9H2R5 |
KLKF_HUMAN |
2 |
KLK15 |
NM_023006 |
| Q9UJU2 |
LEF1_HUMAN |
B |
LEF1 |
AF294627 |
| P19256 |
LFA3_HUMAN |
SHORT |
CD58; LFA3 |
X06296 |
| P53667 |
LIK1_HUMAN |
3 |
LIMK1; LIMK |
NM_016735 |
| Q99698 |
LYST_HUMAN |
MAJOR |
CHS1; LYST; CHS |
NM_000081 |
| P49641 |
M2A2_HUMAN |
SHORT |
MAN2A2; MANA2X |
NM_006122 |
| O95405 |
MADI_HUMAN |
2 |
MADHIP; SARA |
NM_007324 |
| P11137 |
MAP2_HUMAN |
MAJOR |
MAP2 |
NM_002374 |
| MAP2C |
NM_031845 |
|||
| P27816 |
MAP4_HUMAN |
2 |
MAP4 |
BC015149 |
| P25912 |
MAX_HUMAN |
3 |
MAX |
NM_145113 |
| Q15759 |
MK11_HUMAN |
BETA 2 |
MAPK11; PRKM11; SAPK2 |
NM_002751 |
| O15438 |
MRP3_HUMAN |
3A |
ABCC3; CMOAT2; MRP3; MLP2 |
NM_020037 |
| 3B |
NM_020038 |
|||
| P21757 |
MSRE_HUMAN |
II |
MSR1 |
NM_002445 |
| Q9H1B4 |
NXF5_HUMAN |
MAJOR |
NXF5; TAPL1 |
NM_032946 |
| B |
NM_033152 |
|||
| C |
NM_033153 |
|||
| D |
NM_033154 |
|||
| E |
NM_033155 |
|||
| Q96QS1 |
PHMX_HUMAN |
5 |
PHEMX; TSSC6 |
NM_139023 |
| 4 |
NM_139024 |
|||
| O14829 |
PPE1_HUMAN |
2 |
PPEF1; PPEF; PPP7C |
NM_152225 |
| Q9UMR5 |
PPT2_HUMAN |
2 |
PPT2 |
NM_138934 |
| Q9NQW5 |
PRD7_HUMAN |
MAJOR |
PRDM7; PFM4 |
NM_052996 |
| O14818 |
PSA7_HUMAN |
4 |
PSMA7 |
NM_152255 |
| P55036 |
PSD4_HUMAN |
RPN10E |
PSMD4; MCB1 |
NM_153822 |
| P49768 |
PSN1_HUMAN |
I 374 |
PSEN1; PSNL1; AD3; PS1 |
NM_007319 |
| P23468 |
PTPD_HUMAN |
MAJOR |
PTPRD |
NM_002839 |
| O75771 |
R51D_HUMAN |
2 |
RAD51L3; RAD51D |
NM_133627 |
| Q93062 |
RBMS_HUMAN |
MAJOR |
RBPMS |
NM_006867 |
| P78563 |
RED1_HUMAN |
MAJOR |
ADARB1; RED1; DRADA2 |
NM_015833 |
| O15126 |
SCA1_HUMAN |
2 |
SCAMP1; SCAMP |
NM_052822 |
| Q13243 |
SFR5_HUMAN |
SRP40 2 |
SFRS5; SRP40; HRS |
NM_006925 |
| O60902 |
SHX2_HUMAN |
MAJOR |
SHOX2; SHOT; OG12X |
NM_006884 |
| Q13425 |
SNB2_HUMAN |
2 |
SNTB2; SNT2B2 |
NM_130845 |
| Q9Y5W8 |
SNXD_HUMAN |
2 |
SNX13; KIAA0713 |
NM_015132 |
| P18583 |
SON_HUMAN |
E |
SON; NREBP; DBP5; C21ORF50; KIAA1019 |
NM_058183 |
| C |
NM_138926 |
|||
| Q15528 |
SUR5_HUMAN |
SURF5A |
SURF5; SURF-5 |
NM_006752 |
| O14763 |
T10B_HUMAN |
MAJOR |
TNFRSF10B; DR5; TRAILR2; TRICK2; KILLER; ZTNFR9 |
NM_003842 |
| SHORT |
NM_147187 |
|||
| Q9BZY9 |
TM31_HUMAN |
BETA |
TRIM31 |
NM_052816 |
| P25445 |
TNR6_HUMAN |
4 |
TNFRSF6; APT1; FAS; FAS1 |
NM_152873 |
| 5 |
NM_152875 |
|||
| 3 |
NM_152876 |
|||
| 2 |
NM_152877 |
|||
| P00750 |
TPA_HUMAN |
SHORT |
PLAT |
NM_000931 |
| Q93038 |
TR12_HUMAN |
12 |
TNFRSF25; TNFRSF12; WSL1; WSL; APO3; DR3; DDR3 |
NM_148968 |
| 4 |
NM_148969 |
|||
| 3 |
NM_148971 |
|||
| 5 |
NM_148972 |
|||
| 6 |
NM_148973 |
|||
| 7 |
NM_148974 |
|||
| Q9BYM8 |
U7I3_HUMAN |
4 |
UBCE7IP3; C20ORF18; XAP4 |
NM_031227 |
| 2 |
NM_031228 |
|||
| P58418 |
USH3_HUMAN |
B |
USH3A |
NM_174880 |
| Q9NP71 |
WS14_HUMAN |
5 |
WBSCR14; MIO |
NM_032994 |
| Q02040 |
XE7_HUMAN |
SHORT |
(XE7X; XE7; DXYS155E); (XE7Y; XE7; DXYS155E) |
NM_005088 |
| Q9Y493 |
ZAN_HUMAN |
1 |
ZAN |
NM_173055 |
| 2 |
NM_173056 |
|||
| 4 |
NM_173057 |
|||
| 5 |
NM_173058 |
|||
|
|
||||
|
The 144 alternatively spliced human protein isoforms from SWISS-PROT V.41 whose mRNA transcripts contain premature-termination codons are listed. The SWISS-PROT accession number, SWISS-PROT identifier, gene name(s), and cDNA/mRNA sequence for each isoform are given. Isoforms discussed in the text are in bold. Isoforms labeled "MAJOR" are those whose sequence is displayed in SWISS-PROT for that entry. These isoforms are not necessarily the most abundant. |
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|
Hillman et al. Genome Biology 2004 5:R8 doi:10.1186/gb-2004-5-2-r8 |
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