Table 1 |
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|
Assignment of InterAct classes and models |
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| Treatments |
Light-carbon interactions |
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|
|
|
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| +C/-L |
+C/+L |
-C/+L |
InterAct class |
Interaction |
Model |
Examples of other classes in the same model |
|
|
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| No change (0x) |
Induced (3x) |
Induced (3x) |
011 |
None; responds only to light |
None |
110, -1-10, 0-1-1 |
| Induced (5x) |
Induced (10x) |
Induced (5x) |
121 |
Inductive |
Independent (model 1) |
Repressive (such as -1-2-1); antagonistic (such as -10-1) |
| No change (0x) |
Induced (3x) |
No change (0x) |
010 |
Synergistic |
Dependent (model 2) |
010 (also synergistic) |
| Induced (5x) |
Induced (5x) |
Induced (5x) |
111 |
Equal effect (whether separately or together) |
Independent and Dependent (model 3) |
C dominates (such as 221); L dominates (such as 122); suppressed (such as 210); Enhanced
(such as -1-20) |
|
|
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|
For simplicity, the values for each condition that make up the InterAct classes reflect only whether one response is higher than another, not the amount by which it is increased with respect to the untreated (-C,-L) sample. For example, the threefold induction in the first row and the fivefold induction in the second row are both counted as 1 and the tenfold induction as 2. See text for further details. Modified from Thum et al. [2]. |
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|
Reyes and Chua Genome Biology 2004 5:213 |
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