Table 2

Exemplars of mouse LTR retrotransposon families characterized in this study

Family

Accession number

Location

Chromosome number

LTR length

Element length (bp)

TSD

LTR-LTR identity (%)


Mmr1_MmERV

AC116580

60869-69866

18

562

8,998

GATG

99.1

Mmr2_MuLV

AC122266

144706-153433

8

523

8,728

AGCT

99.8

Mmr3_MuRRS

AC131730

135746-141194

5

482

5,468

TGTG

97.6

Mmr4

AC129291

52257-60643

6

431

8,391

GCTG

ND

Mmr5

AC125146

55312-65867

2

458

10,556

CCTTGT

96.0

Mmr6

AL645686

82031-82609*

13

ND

ND

ND

ND

Mmr7

AL669907

109127-109663*

11

ND

ND

ND

ND

Mmr8

AL63044

52153-57800

11

415

5,648

GCTCAA

ND

Mmr9

AC093445

57410-58100*

1

ND

ND

ND

ND

Mmr10_IAP

AC066688

63525-70600

6

336

7,076

ATAACT

99.7

Mmr11_MMTV

AC122322

95423-105323

6

1328

9,901

TTGTAC

100.0

Mmr12

AL669825

36552-43387

11

398

6,836

CTTCAT

90.0

Mmr13

AC122304

117988-118560*

18

ND

ND

ND

ND

Mmr14

AC127274

11141-11509

17

380

8,969

AGAAAG

ND

Mmr15

AL669827

49044-57291

11

306

8,248

CAGAGA

96.0

Mmr16

BX294008

113859-114576*

X

ND

ND

ND

ND

Mmr17

AC090008

169300-176476

2

351

7,177

GCCTCT

93.0

Mmr18

AC093341

96667-101604

5

359

4,938

GGGATC

94.4

Mmr19_MusD

AC24426

12212-13012*

13

ND

ND

ND

ND

Mmr20_MuERV_L

AF481949

811-7241

12

494

6,331

GTCGG

100.0

Mmr21_MaLR

AL672246

35744-37735

X

492

1,992

GTCAC

ND


*Endpoints given are for RT not the whole element. ND, not determined.

McCarthy and McDonald Genome Biology 2004 5:R14  

Open Data