Table 2 |
|||||||
|
Exemplars of mouse LTR retrotransposon families characterized in this study |
|||||||
| Family |
Accession number |
Location |
Chromosome number |
LTR length |
Element length (bp) |
TSD |
LTR-LTR identity (%) |
|
|
|||||||
| Mmr1_MmERV |
AC116580 |
60869-69866 |
18 |
562 |
8,998 |
GATG |
99.1 |
| Mmr2_MuLV |
AC122266 |
144706-153433 |
8 |
523 |
8,728 |
AGCT |
99.8 |
| Mmr3_MuRRS |
AC131730 |
135746-141194 |
5 |
482 |
5,468 |
TGTG |
97.6 |
| Mmr4 |
AC129291 |
52257-60643 |
6 |
431 |
8,391 |
GCTG |
ND |
| Mmr5 |
AC125146 |
55312-65867 |
2 |
458 |
10,556 |
CCTTGT |
96.0 |
| Mmr6 |
AL645686 |
82031-82609* |
13 |
ND |
ND |
ND |
ND |
| Mmr7 |
AL669907 |
109127-109663* |
11 |
ND |
ND |
ND |
ND |
| Mmr8 |
AL63044 |
52153-57800 |
11 |
415 |
5,648 |
GCTCAA |
ND |
| Mmr9 |
AC093445 |
57410-58100* |
1 |
ND |
ND |
ND |
ND |
| Mmr10_IAP |
AC066688 |
63525-70600 |
6 |
336 |
7,076 |
ATAACT |
99.7 |
| Mmr11_MMTV |
AC122322 |
95423-105323 |
6 |
1328 |
9,901 |
TTGTAC |
100.0 |
| Mmr12 |
AL669825 |
36552-43387 |
11 |
398 |
6,836 |
CTTCAT |
90.0 |
| Mmr13 |
AC122304 |
117988-118560* |
18 |
ND |
ND |
ND |
ND |
| Mmr14 |
AC127274 |
11141-11509 |
17 |
380 |
8,969 |
AGAAAG |
ND |
| Mmr15 |
AL669827 |
49044-57291 |
11 |
306 |
8,248 |
CAGAGA |
96.0 |
| Mmr16 |
BX294008 |
113859-114576* |
X |
ND |
ND |
ND |
ND |
| Mmr17 |
AC090008 |
169300-176476 |
2 |
351 |
7,177 |
GCCTCT |
93.0 |
| Mmr18 |
AC093341 |
96667-101604 |
5 |
359 |
4,938 |
GGGATC |
94.4 |
| Mmr19_MusD |
AC24426 |
12212-13012* |
13 |
ND |
ND |
ND |
ND |
| Mmr20_MuERV_L |
AF481949 |
811-7241 |
12 |
494 |
6,331 |
GTCGG |
100.0 |
| Mmr21_MaLR |
AL672246 |
35744-37735 |
X |
492 |
1,992 |
GTCAC |
ND |
|
|
|||||||
|
*Endpoints given are for RT not the whole element. ND, not determined. |
|||||||
|
McCarthy and McDonald Genome Biology 2004 5:R14 |
|||||||
