Table 1 |
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|
Indels in the 12 subunits of RNA polymerase |
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| Total number of indels |
Number of specific indels |
Percentage of specific indels |
|
|
|
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| Aeropyrum pernix |
38 |
4 |
10.53 |
| Pyrobaculum aerophilum |
33 |
5 |
15.15 |
| Sulfolobus solfataricus |
28 |
1 |
3.57 |
| Sulfolobus tokodaii |
30 |
3 |
10 |
| Archaeoglobus fulgidus |
17 |
2 |
11.76 |
| Halobacterium sp. |
23 |
2 |
13.04 |
| Haloarcula marismortui |
24 |
3 |
12.50 |
| Methanocaldococcus jannaschii |
24 |
7 |
29.17 |
| Methanococcus maripaludis |
22 |
6 |
27.27 |
| Methanopyrus kandleri |
57 |
27 |
47.37 |
| Methanosarcinales |
10 |
2 |
20 |
| Methanothermobacter thermautotrophicus |
17 |
2 |
11.76 |
| Thermococcales |
19 |
2 |
10.53 |
| Thermoplasmatales |
36 |
8 |
22.22 |
|
|
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|
For each species, regions containing insertions/deletions (indels) have been counted for the 12 RNA polymerase subunits (A', A", B, D, E', E", F, H, K, L, N, P), TFS, NusA and NusG. We use 'indel region' terms because if two species exhibit indels in the same region, even if they are different sizes, we count this region as a shared indel region. For each species, the number and percentage of specific regions containing indels (that is, the indel region is exclusive to that species and is not shared by any other species) are indicated. As they share exactly the same indels, the three Pyrococcus species, the three Methanosarcina species and the two Thermoplasma species plus Ferroplasma are grouped in Thermococcales, Methanosarcinales and Thermoplasmatales respectively. Consequently, the specific indels are those specific to the group. |
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|
Brochier et al. Genome Biology 2004 5:R17 |
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