Table 1

List of QuintOPs that support the indicated tree topology with bootstrap support above 65%

Function

Supporting hypothesis

Bootstrap support


Undecaprenyl diphosphate synthase homologs

Tree 11 [15]

81

Seryl-tRNA synthetase

Tree 11 [15]

100

Arginyl-tRNA synthetase homologs

Tree 11 [15]

67

Succinyl-CoA synthetase, beta subunit

Tree 11 [15]

96

Signal recognition particle, subunit SRP54

Tree 11 [15]

68

Nicotinate-nucleotide pyrophosphorylase

Tree 11 [15]

77

Anthranilate phosphoribosyltransferase

Tree 11 [15]

70

Glu-tRNA amidotransferase, subunit A homologs

Tree 11 [15]

69

Phenylalanyl-tRNA synthetase alpha subunit

Tree 11 [15]

99

Adenylosuccinate lyase

Tree 11 [15]

75

Aspartate aminotransferase

Tree 12 [16]

92

Carbamoyl-phosphate synthase, small subunit

Tree 12 [16]

83

Ketol-acid reductoisomerase homologs

Tree 12 [16]

72

Dihydroxy-acid dehydratase

Tree 12 [16]

100

Homoserine dehydrogenase

Tree 12 [16]

82

Histidinol-phosphate aminotransferase

Tree 12 [16]

66

NH3-dependent NAD+ synthetase

Tree 9: genes of mitochondrial origin

67

Argininosuccinate synthetase

Tree 9: genes of mitochondrial origin

95

Carbamoyl-phosphate synthase large subunit

Tree 2 [20]

91

Phosphoglycerate kinase

Tree 4

79

Hypothetical protein

Tree 4

100

Translation initiation factor eIF-2B homologs

Tree 4

67

Argininosuccinate lyase

Tree 4

75

Glutamate synthase

Tree 4

80

Phosphoribosylformylglycinamidine synthase

Tree 15

73

Ribosomal protein S3 homologs

Tree 15

71


Tree numbers correspond to the designations in used in Figures 7 and 8.

Zhaxybayeva et al. Genome Biology 2004 5:R20   doi:10.1186/gb-2004-5-3-r20

Open Data