Research
Prediction of Saccharomyces cerevisiae replication origins
1 Graduate Group in Biophysics, University of California-Berkeley, Berkeley, CA 94720-3204, USA
2 Department of Computer Science, University of California-Berkeley, Berkeley, CA 94720-3204, USA
3 Department of Molecular and Cellular Biology, Barker Hall, University of California-Berkeley, Berkeley, CA 94720-3204, USA
Genome Biology 2004, 5:R22 doi:
Published: 4 March 2004Additional files
Additional data file 1:
Locations of known origins and ORC/MCM binding sites used in the evaluation and training sets
Format: XLS Size: 63KB Download file
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Additional data file 2:
Position weight matrices used by Oriscan
Format: XLS Size: 84KB Download file
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Additional data file 3:
ACS matches identified by Oriscan
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Additional data file 4:
The ranked list of 1,882 candidate origins that passed the first three steps of Oriscan
Format: XLS Size: 367KB Download file
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Additional data file 5:
ACS and flanking score distributions
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Additional data file 6:
The ARS assay results
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Additional data file 7:
Representative ARS assays
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Additional data file 8:
Sequences of the training set and experimentally supported predictions ranking 350 or better
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Additional data file 9:
The frequency matrix calculated from the sequences in Additional data file 8, and used to generate Figure 6 and Additional data file 10
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Additional data file 10:
A graphical representation of ACS and B1 nucleotide frequencies in all experimentally supported Oriscan predictions and known origins
Format: PDF Size: 12KB Download file
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