  ResearchPrediction of Saccharomyces cerevisiae replication originsAdam M Breier1, Sourav Chatterji2 and Nicholas R Cozzarelli3 1Graduate Group in Biophysics, University of California-Berkeley, Berkeley, CA 94720-3204, USA 2Department of Computer Science, University of California-Berkeley, Berkeley, CA 94720-3204, USA 3Department of Molecular and Cellular Biology, Barker Hall, University of California-Berkeley, Berkeley, CA 94720-3204, USA
Genome Biology 2004, 5:R22
Subject areas: Molecular biology, Bioinformatics, Genome studies, Model organisms Additional filesAdditional data file 1: Locations of known origins and ORC/MCM binding sites used in the evaluation and training sets Format: XLS Size: 63KB Download file This file can be viewed with: Microsoft Excel Viewer Additional data file 2: Position weight matrices used by Oriscan Format: XLS Size: 84KB Download file This file can be viewed with: Microsoft Excel Viewer Additional data file 3: ACS matches identified by Oriscan Format: XLS Size: 2.1MB Download file This file can be viewed with: Microsoft Excel Viewer Additional data file 4: The ranked list of 1,882 candidate origins that passed the first three steps of Oriscan Format: XLS Size: 367KB Download file This file can be viewed with: Microsoft Excel Viewer Additional data file 5: ACS and flanking score distributions Format: PDF Size: 12KB Download file This file can be viewed with: Adobe Acrobat Reader Additional data file 6: The ARS assay results Format: XLS Size: 21KB Download file This file can be viewed with: Microsoft Excel Viewer Additional data file 7: Representative ARS assays Format: PDF Size: 3.6MB Download file This file can be viewed with: Adobe Acrobat Reader Additional data file 8: Sequences of the training set and experimentally supported predictions ranking 350 or better Format: XLS Size: 98KB Download file This file can be viewed with: Microsoft Excel Viewer Additional data file 9: The frequency matrix calculated from the sequences in Additional data file 8, and used to generate Figure 6 and Additional data file 10 Format: XLS Size: 45KB Download file This file can be viewed with: Microsoft Excel Viewer Additional data file 10: A graphical representation of ACS and B1 nucleotide frequencies in all experimentally supported Oriscan predictions and known origins Format: PDF Size: 12KB Download file This file can be viewed with: Adobe Acrobat Reader |
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