Hotspots of mammalian chromosomal evolution
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* Corresponding author: Evan E Eichler eee@cwru.edu
Genome Biology 2004, 5:R23 doi:
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Research
Comparative genomics reveals birth and death of fragile regions in mammalian evolution Max A Alekseyev, Pavel A Pevzner Genome Biology 2010, 11:R117 (30 November 2010) A new model explains the frequencies of breakpoints at genomic rearrangement hotspots by demonstrating that fragile sites undergo birth and death.
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Claire Lemaitre, Lamia Zaghloul, Marie-France Sagot, Christian Gautier, Alain Arneodo, Eric Tannier, Benjamin Audit BMC Genomics 2009, 10:335 (24 July 2009) Mammalian evolutionary breakpoints occur frequently in GC-rich intergenic regions characteristic of high-transcriptional activity and replication initiation, suggesting that their distribution is linked to natural selection and a mutational bias due to local open chromatin state.
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Retrocopy contributions to the evolution of the human genome Robert Baertsch, Mark Diekhans, W James Kent, David Haussler, Jürgen Brosius BMC Genomics 2008, 9:466 (8 October 2008) |
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Tomàs Marques-Bonet, Ze Cheng, Xinwei She, Evan E Eichler, Arcadi Navarro BMC Genomics 2008, 9:384 (12 August 2008) |
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Research article
Precise detection of rearrangement breakpoints in mammalian chromosomes Claire Lemaitre, Eric Tannier, Christian Gautier, Marie-France Sagot BMC Bioinformatics 2008, 9:286 (18 June 2008) By comparing an organism's chromosomes to those of closely related species using a segmentation algorithm, breakpoints can be precisely delimited and their internal structure described, providing insights into the mechanisms and evolutionary properties of chromosomal rearrangements.
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Research
Hominoid chromosomal rearrangements on 17q map to complex regions of segmental duplication Maria Cardone, Zhaoshi Jiang, Pietro D'Addabbo, Nicoletta Archidiacono, Mariano Rocchi, Evan E Eichler, Mario Ventura Genome Biology 2008, 9:R28 (7 February 2008) A FISH analysis of chromosome 17 homologs in primates suggests that genomic architecture has a direct role in karyotype evolution and in the genomic instability associated with human disease. |
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Kira V Bulazel, Gianni C Ferreri, Mark DB Eldridge, Rachel J O'Neill Genome Biology 2007, 8:R170 (20 August 2007) The evolution of three classes of centromere sequences across nine species of macropodine marsupials were compared with that of other genes, showing that each species has experienced differential expansion and contraction of individual classes. |
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Research
Is mammalian chromosomal evolution driven by regions of genome fragility? Aurora Ruiz-Herrera, Jose Castresana, Terence J Robinson Genome Biology 2006, 7:R115 (8 December 2006) An analysis of the distribution of evolutionary breakpoints in eight species suggests that certain human chromosomal regions are repeatedly used during the evolutionary process, are associated with fragile sites, and show an enrichment of tandem repeats. |
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Research article
Recurring genomic breaks in independent lineages support genomic fragility Hanno Hinsch, Sridhar Hannenhalli BMC Evolutionary Biology 2006, 6:90 (7 November 2006) |
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Laurent Schibler, Anne Roig, Marie-Françoise Mahe, Pascal Laurent, Hélène Hayes, François Rodolphe, Edmond P Cribiu BMC Genomics 2006, 7:194 (1 August 2006) |
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Mihaela Stefan, Kathryn C Claiborn, Edyta Stasiek, Jing-Hua Chai, Tohru Ohta, Richard Longnecker, John M Greally, Robert D Nicholls BMC Genomics 2005, 6:157 (9 November 2005) |
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Stefan Taudien, Petra Galgoczy, Klaus Huse, Kathrin Reichwald, Markus Schilhabel, Karol Szafranski, Atsushi Shimizu, Shuichi Asakawa, Adam Frankish, Ivan F Loncarevic, Nobuyoshi Shimizu, Roman Siddiqui, Matthias Platzer BMC Genomics 2004, 5:92 (10 December 2004) |