Table 1 |
||
|
Species used in the current work and their accession numbers |
||
|
Species |
Accession number |
Genome size (bp) |
|
|
||
|
Agrobacterium tumefaciens str. C58 (Cereon) |
NC_003062 |
2,841,581 |
|
Agrobacterium tumefaciens str. C58 (U. Washington) |
NC_003304 |
2,841,490 |
|
Aquifex aeolicus VF5 |
NC_000918 |
1,551,335 |
|
Bacillus anthracis str. Ames |
NC_003997 |
5,227,293 |
|
Bacillus cereus ATCC 14579 |
NC_004722 |
5,411,809 |
|
Bacillus halodurans |
NC_002570 |
4,202,353 |
|
Bacillus subtilis subsp. subtilis str. 168 |
NC_000964 |
4,214,814 |
|
Bacteroides thetaiotaomicron VPI-5482 |
NC_004663 |
6,260,361 |
|
Bifidobacterium longum NCC2705 |
NC_004307 |
2,256,646 |
|
Bordetella bronchiseptica |
NC_002927 |
5,339,179 |
|
Bordetella parapertussis |
NC_002928 |
4,773,551 |
|
Bordetella pertussis |
NC_002929 |
4,086,189 |
|
Borrelia burgdorferi B31 |
NC_001318 |
910,724 |
|
Bradyrhizobium japonicum USDA 110 |
NC_004463 |
9,105,828 |
|
Brucella melitensis 16M |
NC_003317 |
2,117,144 |
|
Brucella suis 1330 |
NC_004310 |
2,107,792 |
|
Buchnera aphidicola str. APS (Acyrthosiphon pisum) |
NC_002528 |
640,681 |
|
Buchnera aphidicola str. Bp (Baizongia pistaciae) |
NC_004545 |
615,980 |
|
Buchnera aphidicola str. Sg (Schizaphis graminum) |
NC_004061 |
641,454 |
|
Campylobacter jejuni subsp. jejuni NCTC 11168 |
NC_002163 |
1,641,481 |
|
Candidatus Blochmannia floridanus |
NC_005061 |
705,557 |
|
Caulobacter crescentus CB15 |
NC_002696 |
4,016,947 |
|
Chlamydia muridarum |
NC_002620 |
1,072,950 |
|
Chlamydia trachomatis |
NC_000117 |
1,042,519 |
|
Chlamydophila caviae GPIC |
NC_003361 |
1,173,390 |
|
Chlamydophila pneumoniae AR39 |
NC_002179 |
1,229,858 |
|
Chlamydophila pneumoniae CWL029 |
NC_000922 |
1,230,230 |
|
Chlamydophila pneumoniae J138 |
NC_002491 |
1,226,565 |
|
Chlamydophila pneumoniae TW-183 |
NC_005043 |
1,225,935 |
|
Chlorobium tepidum TLS |
NC_002932 |
2,154,946 |
|
Chromobacterium violaceum ATCC 12472 |
NC_005085 |
4,751,080 |
|
Clostridium acetobutylicum |
NC_003030 |
3,940,880 |
|
Clostridium perfringens str. 13 |
NC_003366 |
3,031,430 |
|
Clostridium tetani E88 |
NC_004557 |
2,799,251 |
|
Corynebacterium diphtheriae |
NC_002935 |
2,488,635 |
|
Corynebacterium efficiens YS-314 |
NC_004369 |
3,147,090 |
|
Corynebacterium glutamicum ATCC 13032 |
NC_003450 |
3,309,401 |
|
Coxiella burnetii RSA 493 |
NC_002971 |
1,995,275 |
|
Deinococcus radiodurans |
NC_001263 |
2,648,638 |
|
Enterococcus faecalis V583 |
NC_004668 |
3,218,031 |
|
Escherichia coli CFT073 |
NC_004431 |
5,231,428 |
|
Escherichia coli K12 |
NC_000913 |
4,639,221 |
|
Escherichia coli O157:H7 |
NC_002695 |
5,498,450 |
|
Escherichia coli O157:H7 EDL933 |
NC_002655 |
5,528,445 |
|
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 |
NC_003454 |
2,174,500 |
|
Gloeobacter violaceus |
NC_005125 |
4,659,019 |
|
Haemophilus ducreyi 35000HP |
NC_002940 |
1,698,955 |
|
Haemophilus influenzae Rd |
NC_000907 |
1,830,138 |
|
Helicobacter hepaticus ATCC 51449 |
NC_004917 |
1,799,146 |
|
Helicobacter pylori 26695 |
NC_000915 |
1,667,867 |
|
Helicobacter pylori J99 |
NC_000921 |
1,643,831 |
|
Lactobacillus plantarum WCFS1 |
NC_004567 |
3,308,274 |
|
Lactococcus lactis subsp. lactis |
NC_002662 |
2,365,589 |
|
Leptospira interrogans serovar lai str. 56601 |
NC_004342 |
4,332,241 |
|
Listeria innocua |
NC_003212 |
3,011,208 |
|
Listeria monocytogenes EGD-e |
NC_003210 |
2,944,528 |
|
Mesorhizobium loti |
NC_002678 |
7,036,074 |
|
Mycobacterium bovis subsp. bovis AF2122/97 |
NC_002945 |
4,345,492 |
|
Mycobacterium leprae |
NC_002677 |
3,268,203 |
|
Mycobacterium tuberculosis CDC1551 |
NC_002755 |
4,403,836 |
|
Mycobacterium tuberculosis H37Rv |
NC_000962 |
4,411,529 |
|
Mycoplasma gallisepticum R |
NC_004829 |
996,422 |
|
Mycoplasma genitalium |
NC_000908 |
580,074 |
|
Mycoplasma penetrans |
NC_004432 |
1,358,633 |
|
Mycoplasma pneumoniae |
NC_000912 |
816,394 |
|
Mycoplasma pulmonis |
NC_002771 |
963,879 |
|
Neisseria meningitidis MC58 |
NC_003112 |
2,272,351 |
|
Neisseria meningitidis Z2491 |
NC_003116 |
2,184,406 |
|
Nitrosomonas europaea ATCC 19718 |
NC_004757 |
2,812,094 |
|
Nostoc sp. PCC 7120 |
NC_003272 |
6,413,771 |
|
Oceanobacillus iheyensis HTE831 |
NC_004193 |
3,630,528 |
|
Pasteurella multocida |
NC_002663 |
2,257,487 |
|
Photorhabdus luminescens subsp. laumondii TTO1 |
NC_005126 |
5,688,987 |
|
Pirellula sp. |
NC_005027 |
7,145,576 |
|
Porphyromonas gingivalis W83 |
NC_002950 |
2,343,476 |
|
Prochlorococcus marinus str. MIT 9313 |
NC_005071 |
2,410,873 |
|
Prochlorococcus marinus subsp. marinus str. CCMP1375 |
NC_005042 |
1,751,080 |
|
Prochlorococcus marinus subsp. pastoris str. CCMP1378 |
NC_005072 |
1,657,990 |
|
Pseudomonas aeruginosa PA01 |
NC_002516 |
6,264,403 |
|
Pseudomonas putida KT2440 |
NC_002947 |
6,181,863 |
|
Pseudomonas syringae pv. tomato str. DC3000 |
NC_004578 |
6,397,126 |
|
Ralstonia solanacearum |
NC_003295 |
3,716,413 |
|
Rickettsia conorii |
NC_003103 |
1,268,755 |
|
Rickettsia prowazekii |
NC_000963 |
1,111,523 |
|
Salmonella enterica subsp. enterica serovar Typhi |
NC_003198 |
4,809,037 |
|
Salmonella enterica subsp. enterica serovar Typhi Ty2 |
NC_004631 |
4,791,961 |
|
Salmonella typhimurium LT2 |
NC_003197 |
4,857,432 |
|
Shewanella oneidensis MR-1 |
NC_004347 |
4,969,803 |
|
Shigella flexneri 2a str. 2457T |
NC_004741 |
4,599,354 |
|
Shigella flexneri 2a str. 301 |
NC_004337 |
4,607,203 |
|
Sinorhizobium meliloti |
NC_003047 |
3,654,135 |
|
Staphylococcus aureus subsp. aureus MW2 |
NC_003923 |
2,820,462 |
|
Staphylococcus aureus subsp. aureus Mu50 |
NC_002758 |
2,878,040 |
|
Staphylococcus aureus subsp. aureus N315 |
NC_002745 |
2,814,816 |
|
Staphylococcus epidermidis ATCC 12228 |
NC_004461 |
2,499,279 |
|
Streptococcus agalactiae 2603V/R |
NC_004116 |
2,160,267 |
|
Streptococcus agalactiae NEM316 |
NC_004368 |
211,485 |
|
Streptococcus mutans UA159 |
NC_004350 |
203,0921 |
|
Streptococcus pneumoniae R6 |
NC_003098 |
2,038,615 |
|
Streptococcus pneumoniae TIGR4 |
NC_003028 |
2,160,837 |
|
Streptococcus pyogenes M1 GAS |
NC_002737 |
1,852,441 |
|
Streptococcus pyogenes MGAS315 |
NC_004070 |
1,900,521 |
|
Streptococcus pyogenes MGAS8232 |
NC_003485 |
1,895,017 |
|
Streptococcus pyogenes SSI-1 |
NC_004606 |
1,894,275 |
|
Streptomyces avermitilis MA-4680 |
NC_003155 |
9,025,608 |
|
Streptomyces coelicolor A3(2) |
NC_003888 |
8,667,507 |
|
Synechococcus sp. WH 8102 |
NC_005070 |
2,434,428 |
|
Synechocystis sp. PCC 6803 |
NC_000911 |
3,573,470 |
|
Thermoanaerobacter tengcongensis |
NC_003869 |
2,689,445 |
|
Thermosynechococcus elongates BP-1 |
NC_004113 |
2,593,857 |
|
Thermotoga maritima |
NC_000853 |
1,860,725 |
|
Treponema pallidum |
NC_000919 |
1,138,011 |
|
Tropheryma whipplei TW08/27 |
NC_004551 |
925,938 |
|
Tropheryma whipplei str. Twist |
NC_004572 |
927,303 |
|
Ureaplasma urealyticum |
NC_002162 |
751,719 |
|
Vibrio cholerae |
NC_002505 |
2,961,149 |
|
Vibrio parahaemolyticus RIMD 2210633 |
NC_004603 |
3,288,558 |
|
Vibrio vulnificus CMCP6 |
NC_004459 |
3,281,945 |
|
Vibrio vulnificus YJ016 |
NC_005139 |
3,354,505 |
|
Wigglesworthia glossinidia (from Glossina brevipalpis) |
NC_004344 |
697,724 |
|
Wolinella succinogenes |
NC_005090 |
2,110,355 |
|
Xanthomonas axonopodis pv. citri str. 306 |
NC_003919 |
5,175,554 |
|
Xanthomonas campestris pv. campestris str. ATCC 33913 |
NC_003902 |
5,076,188 |
|
Xylella fastidiosa 9a5c |
NC_002488 |
2,679,306 |
|
Xylella fastidiosa Temecula1 |
NC_004556 |
2,519,802 |
|
Yersinia pestis CO92 |
NC_003143 |
4,653,728 |
|
Yersinia pestis KIM |
NC_004088 |
4,600,755 |
|
|
||
|
Pushker et al. Genome Biology 2004 5:R27 |
||
