Table 1

Antibodies used in Figure 5 and 5a summary of inter-set correlations

Antibody name
 RCA/direct (Figure 5a)
 RCA/indirect (Figure 5b)
 RCA/indirect (Figure 5c)
AB01
 VAI00101 anti-cathepsin B (ab-1)
 -/-
 0.99/-
 0.83*/-
AB02
 VAI00194 anti-von Willebrand factor
 0.94/0.99
 0.94/0.8
 0.79/0.6
AB03
 VAI00198 anti-uPA
 -/-
 -/-
 0.95/0.95
AB05
 VAI00233 anti-LD1234
 0.8/-
 0.8/-
 0.95/-
AB06
 VAI00243 anti-IL-1alpha
 0.99/-
 0.99/-
 0.97/0.98
AB07
 VAI00244 anti-IGG1
 0.94/0.95
 0.94/0.67
 0.87/0.74
AB08
 VAI00245 anti-complement C3
 0.82*/0.97
 0.82*/-
 0.99/0.68*
AB09
 VAI00246 anti-complement C4
 0.93/0.98
 0.93/0.79
 0.78/0.81
AB10
 VAI00261 anti-VEGF
 0.84*/0.95
 0.84*/-
 0.77/0.69
AB11
 VAI00263 anti-alpha2-macroglobulin
 0.71/0.99
 0.71/0.77
 0.67/0.91
AB12
 VAI00269 anti-IL-6
 0.74*/-
 0.74*/-
 0.7/-
AB13
 VAI00273 anti-ceruloplasmin
 -/0.71
 -/-
 0.98/0.87
AB14
 VAI00274 anti-AP
 0.98/0.93
 0.98/0.74
 0.9/0.77
AB15
 VAI00276 anti-Alpha-1-AT
 0.95/0.95
 0.95/-
 0.75/0.86
AB16
 VAI00277.1 anti-haptoglobulin
 0.96/-
 0.96/-
 0.95/0.89
AB17
 VAI00282 anti-alpha-fetoprotein
 0.98/0.98
 0.98/0.98
 0.89/0.9
AB18
 VAI00297 anti-Timp-1
 -/-
 -/-
 0.96/0.96
AB19
 VAI00298 anti-IGFBP-3
 0.99/0.97
 0.99/0.69
 0.86/0.26*
AB20
 VAI00300 anti-IL-8
 0.99/0.96
 0.99/0.77
 0.92/0.97
AB21
 VAI00303 anti-VEGF
 0.63*/0.83
 0.63*/0.77*
 0.66/0.87
AB22
 VAI00305 anti-IL-6
 -/-
 -/-
 0.93/0.95
AB23
 VAI00307 anti-IL-2
 0.78/0.96
 0.78/-
 0.87/0.63
AB24
 VAI00308 anti-TSP-1
 0.91/0.95
 0.91/-
 0.9/-
AB25
 VAI00338 anti-plasminogen
 0.96/-
 0.96/-
 0.88/0.89
AB26
 VAI00339 anti-CA125
 0.92*/-
 0.92*/-
 0.94/0.76
AB27
 VAI00342 anti-CEA
 0.93/0.91
 0.93/0.73
 0.84/0.71
AB28
 VAI00348 anti-beta2-microglobulin
 0.98/-
 0.98/-
 0.88/0.91
AB29
 VAI00352 anti-PAI
 0.77/0.87
 0.77/-
 0.95/0.87
AB30
 VAI01032 anti-alpha1 ACT
 0.96/0.92
 0.96/0.95
 0.91/0.95
AB31
 VAI01126 anti-albumin
 0.88/0.94
 0.88/0.72
 0.82/0.56*
AB32
 VAI10003 anti-IgG-Fc
 0.98/0.98
 0.98/0.95
 0.87/0.95
AB33
 VAI10007 anti-hemoglobin
 0.97/0.99
 0.97/1
 0.87/0.8
AB34
 VAI10011 anti-IgA
 0.92/0.99
 0.92/0.86
 0.88/0.97
AB35
 VAI10013 anti-transferrin
 0.82/0.96
 0.82/0.75
 0.63/0.79

For each antibody, the correlation between replicate sets of 24 microarrays is given, both for RCA and for direct labeling or indirect detection. The correlation is the Pearson correlation in the overlap between the sets, that is, using only samples for which measurements were available in both sets. Correlations were not calculated if the overlap between the duplicate sample sets was less than three samples or less than half the samples from one of the sets. Asterisk, not a statistically significant correlation, using a 99% confidence level based on the size of overlap between sets.

Zhou et al. Genome Biology 2004 5:R28  

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