Table 5

Data sets and analytical tools sources

Affymetrix gene arrays

Rat. RG_U34A profiles

http://microarray.cnmcresearch.org/pgadatatable.asp webcite

Mouse. MG_U74A profiles

http://www.hopkins-genomics.org/ali/ali008/index.html webcite

http://www.hopkins-genomics.org/ali/ali007/index.html webcite

Dog. HG_U133A profiles

http://www.hopkins-genomics.org/research/researchALI.html webcite

HPAEC. HG-U95Av2 profiles

http://www.hopkins-genomics.org/ali/ali015/index.html webcite

Software and tools

RESOURCERER

http://pga.tigr.org/tigr-scripts/magic/r1.pl webcite

NetAffx

http://www.affymetrix.com/analysis/index.affx webcite

GenMAPP and MAPPFinder

http://www.GenMAPP.org webcite

PubMatrix

http://www.hopkins-genomics.org/resources/resourcesSoftware.html webcite

Python 2.2

http://www.python.org webcite

Stats Module for Python

http://www.nmr.mgh.harvard.edu/Neural_Systems_Group webcite

Grigoryev et al. Genome Biology 2004 5:R34