Table 2

START-domain-containing proteins from Oryza sativa (L.) ssp. indica and japonica

indica sequence

japonica ortholog

japonica locus, ID

Other names

Structure

Size (aa)

START position

Chr.

Transmembrane segments

Rice EST/cDNA

Plant EST


Osi002227.2

NP_915741*

Os01w51311

OSTF1

HD ZLZ START

700*

206-430*

1

-

Y (1)

-

Os01w95290

Osi014526.1

BAB92357

-

GL2

HD ZLZ START

779*

270-506*

1*

-

-

Y (1)

Osi007627.1

BAC77158

-

ROC5

HD ZLZ START

790*

294-533*

2

-

Y (2)

Y (4)

Osi000127.7

CAE02251

-

-

HD ZLZ START

851*

309-583*

4*

-

Y (1)

Y (8)

Osi000666.5

CAE04753

-

ROC2

HD ZLZ START

781*

284-518*

4

-

Y (2)

Y (14)

Osi017902.1

-

-

-

HD ZLZ START

616

231-471

6

1 (i30-52o)

Y (1)

Y (1)

Osi007245.1

-

-

-

HD ZLZ START

749

259-492

8

-

-

Y (15)

Osi010085.1

BAD01388

OSJNBb0075018

OCL3

HD ZLZ START

786*

248-497*

8

-

Y (1)

-

Osi030338.1

BAB85750

-

ROC1

HD ZLZ START

784*

291-520*

8

-

Y

-

Osi042017.1

-

-

-

HD ZLZ START

662

340-566

9

-

-

Y (1)

Osi009778.1

BAC77156

ID207863

ROC3

HD ZLZ START

879*

338-579*

10*

-

Y (1)

Y (4)

-

CAD41424

-

ROC4

HD ZLZ START

806*

309-550*

4*

-

Y (1)*

-

Osi000679.2

BAB92205

B1015E06

-

HD ZIP START

898*

170-413*

1*

-

-

Y (15)

Osi003709.4

AAR04340

-

-

HD ZIP START

839*

157-370*

3*

-

Y (2)

Y (35)

Osi007653.1

AAP54299

-

-

HD ZIP START

840*

159-372*

10*

-

Y (2)

Y (29)

Osi008720.4

-

ID213030

-

HD ZIP START

855*

170-383*

12

-

Y

Y (38)

Osi006159.2

AAG43283

ID214133*

-

HD ZIP START

859*

173-386*

12

-

Y (2)

Y (50)

Osi006334.4

BAD07818

OJ1435_F07

-

PH START DUF1336

804*

256-453*

2

-

-

Y (1)

Osi000253.7

BAC22213

Os06w10955

-

PH START DUF1336

674*

210-328*

6

-

-

Y (4)

Osi018163.1

AAP54082

ID208089*

-

PH START DUF1336

705*

209-381*

10

-

Y (1)

-

-

AAP54296

-

-

PH START DUF1336

773*

204-398*

10*

-

-

Y (6)*

Osi003769.1

BAD09877

-

-

START DUF1336

763*

228-429*

8

-

Y (2)

Y (2)

Osi002751.1

-

ID215312*

-

START

435*

125-312*

2

1 (o43-65i)

Y (1)

Y (5)

Osi002915.3

BAD07966

AP005304

-

START

419

106-327

2

-

Y (2)

Y (23)

Osi005790.2

CAE01295

OSJNBa0020P07

-

START

400*

90-306*

4*

-

Y (2)

Y (24)

Osi007997.2

-

-

-

START

366

56-164

6

-

Y (2)

-

Osi009194.1

BAC83004

-

CP5

START

394*

90-300*

7*

2 (i21-43o362-384i)

Y (1)

Y (10)

Osi064970.1

BAC20079

Os07w00256

-

START

252*

71-173*

7

-

Y (1)

-

Osi091856.1

-

-

-

START

199

30-191

-

-

-

-


The sequence code for each indica protein is shown together with the accession number (GenBank), locus (MOsDB), and/or identification number (KOME rice full-length cDNA) of the putative japonica ortholog. The structure, total size in amino acids (aa), and position of the START domain are listed. Chr., chromosome number indicates map position. *The japonica ortholog was used for sequence analysis. Information for both indica and japonica proteins was available for mapping. Partial protein sequence having homology to HD-START proteins. Numbers of predicted transmembrane segments followed by the amino-acid positions, separated by 'i' if the loop is on the inside or 'o' if it is on the outside (in parentheses), are indicated. The availability of rice and/or plant EST and/or cDNA clones is indicated by a 'Y', and the number of independent matching cloned transcribed sequences is given in parentheses.

Schrick et al. Genome Biology 2004 5:R41   doi:10.1186/gb-2004-5-6-r41

Open Data