Table 4

Putative START domain proteins from bacteria and unicellular protests

Accession code

Other names

Organism

Host

Size (aa)

START position

Transmembrane segments


Bacteria

NP_662060

CT1169

Chlorobium tepidum TLS

-

212

4-170

-

NP_662061

CT1170

Chlorobium tepidum TLS

-

219

20-191

-

ZP_00101525

Desu4746

Desulfitobacterium hafniense

-

185

38-149

-

NP_250270

PA1579

Pseudomonas aeruginosa PA01

Animal/plant

202

11-201

-

ZP_00085958

Pflu3224

Pseudomonas fluorescens PfO-1

Saprophyte

259

75-259

-

NP_745668

PP3531

Pseudomonas putida KT2440

-

199

20-199

-

ZP_00124272

Psyr0554

Pseudomonas syringae pv. syringae B728a

Snap beans

255

60-255

-

NP_792014

PSTP02193

Pseudomonas syringae pv. tomato str. DC3000

Tomato

201

20-201

-

NP_762033

VV20046

Vibrio vulnificus CMCP6

Human

194

1-184

-

NP_640890

XAC0537

Xanthomonas axonopodis pv. citri str. 306

Citrus trees

204

17-204

1 (i7-24o)

Unicellular protists

CAD98678

1Mx.08

Cryptosporidium parvum

Human

1205

980-1204

7 (i206-228o254-276i 309-328o343-360i373-395 o410-432i494-516o)

EAA42387

GLP_137_44802_45608

Giardia lamblia ATCC 50803

Human

268

121-253

-

NP_702493

PF14_0604

Plasmodium falciparum 3D7

Human

258

27-258

-

EAA16354

PY04481

Plasmodium yoelii yoelii

Rodent

290

52-282

-

EAA18304

PY06147

Plasmodium yoelii yoelii

Rodent

276

58-192

-


GenBank accession codes, protein names, and corresponding organisms are shown for predicted proteins that contain a single START domain. Hosts are shown for organisms that are known to be pathogenic. For each protein the total size in amino acids (aa), and position of the START domain are listed. Numbers of predicted transmembrane segments are listed, followed by the amino acid positions separated by 'i' if the loop is on the inside or 'o' if it is on the outside (in parentheses) are indicated.

Schrick et al. Genome Biology 2004 5:R41   doi:10.1186/gb-2004-5-6-r41

Open Data