TXTGate: profiling gene groups with text-based information
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* Corresponding author: Bert Coessens bert.coessens@esat.kuleuven.ac.be
Genome Biology 2004, 5:R43 doi:10.1186/gb-2004-5-6-r43
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Anni 2.0: a multipurpose text-mining tool for the life sciences Rob Jelier, Martijn J Schuemie, Antoine Veldhoven, Lambert CJ Dorssers, Guido Jenster, Jan A Kors Genome Biology 2008, 9:R96 (12 June 2008) Anni 2.0 provides an ontology-based interface to MEDLINE. |
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Text-mining assisted regulatory annotation Stein Aerts, Maximilian Haeussler, Steven van Vooren, Obi L Griffith, Paco Hulpiau, Steven JM Jones, Stephen B Montgomery, Casey M Bergman, Genome Biology 2008, 9:R31 (13 February 2008) Text-mining technologies can be integrated with genome annotation systems, increasing the availability of annotated |
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Research article
Rob Jelier, Guido Jenster, Lambert CJ Dorssers, Bas J Wouters, Peter JM Hendriksen, Barend Mons, Ruud Delwel, Jan A Kors BMC Bioinformatics 2007, 8:14 (18 January 2007) |
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Methodology article
New directions in biomedical text annotation: definitions, guidelines and corpus construction W John Wilbur, Andrey Rzhetsky, Hagit Shatkay BMC Bioinformatics 2006, 7:356 (25 July 2006) |
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Software
Jason M Doherty, Lynn K Carmichael, Jason C Mills BMC Bioinformatics 2006, 7:151 (17 March 2006) |
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Methodology article
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Methodology article
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Software
L2L: a simple tool for discovering the hidden significance in microarray expression data John C Newman, Alan M Weiner Genome Biology 2005, 6:R81 (31 August 2005) A database with lists of differentially expressed genes from published microarray studies is presented together with an application for mining the database with the user’s own microarray data, allowing the identification of novel biological patterns in microarray data. |
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Software
CoPub Mapper: mining MEDLINE based on search term co-publication Blaise TF Alako, Antoine Veldhoven, Sjozef van Baal, Rob Jelier, Stefan Verhoeven, Ton Rullmann, Jan Polman, Guido Jenster BMC Bioinformatics 2005, 6:51 (11 March 2005) |