Table 5 |
||||
|
TXTGate profiling of clusters a, b, c, and d from Chaussabel and Sher [6] (GO vocabulary) |
||||
| Gene symbol |
Cluster terms in [6] |
Terms from TXTGate |
||
|
|
||||
| Cluster a |
LPL |
Lipoprotein |
lipoprotein |
|
| CD36L1 |
Density |
lipas |
||
| LDLR |
Cholesterol |
ldl |
||
| Lipid |
ldl_receptor |
|||
| Adipose |
cholesterol |
|||
| hdl |
||||
| scaveng_receptor |
||||
| high_densiti_lipoprotein |
||||
| low_densiti_lipoprotein_receptor |
||||
| low_densiti_lipoprotein |
||||
| Cluster b |
UPA |
Invasive |
Collagenase |
metalloproteinas |
| PLAUR |
Invasion |
Collagen |
matrix |
|
| SERPIN |
Metastasis |
Matrix |
metalloendopeptidas |
|
| MMP1 |
UPAR |
MMP |
collagenas |
|
| MMP10 |
UPA |
Metalloproteinase |
extracellular_matrix |
|
| MMP14 |
Plasminogen |
Molecule-1 |
alpha |
|
| SPARC |
Urokinase-type |
Adhesion |
upar |
|
| Urokinase |
Vascular |
plasminogen_activ |
||
| Plasmin |
Endothelial |
interstiti |
||
| Activator |
invasion |
|||
| Cluster c |
AMPD3 |
Adenosine |
purinerg |
|
| ADA |
A2A |
adenosin |
||
| ADORA2A |
A1 |
deaminas |
||
| ADORA3 |
Antagonist |
p2 |
||
| P2RX |
Agonist |
p2x |
||
| P2RX1 |
NM |
p1 |
||
| P2RX7 |
agonist |
|||
| receptor |
||||
| adenosin_receptor |
||||
| ada |
||||
| Cluster d |
IP10 |
Interferon |
tumor_necrosi_factor |
|
| MIP1A |
IFN-alpha |
cytokin |
||
| MIP1B |
IFN |
induc |
||
| IL8 |
Interferon-gamma |
interferon |
||
| STAT4 |
IFN-gamma |
inflammatori |
||
| IL12B |
Inducible |
antigen |
||
| TNFRSF9 |
lymphocyt_activ |
|||
| TNFSF9 |
stimul |
|||
| SLAM |
chemokin |
|||
| TNFRSF5 |
monocyt |
|||
| CD83 |
||||
|
|
||||
|
Corresponding terms in Chaussabel and Sher [6] and TXTGate are in bold. TXTGate's profiles are comparably informative. Complete data can be found in Additional data file 2. |
||||
|
Glenisson et al. Genome Biology 2004 5:R43 doi:10.1186/gb-2004-5-6-r43 |
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