Systematic quantification of gene interactions by phenotypic array analysis
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* Corresponding author: John L Hartman jhartman@fhcrc.org
Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, WA 98109, USA
Genome Biology 2004, 5:R49 doi:10.1186/gb-2004-5-7-r49
Published: 29 June 2004Additional files
Additional data file 1:
A figure showing determination of three concentrations of four different perturbing agents with growth inhibition equivalent to that of 50, 100, and 150 mM HU
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Additional data file 2:
A figure showing intrinsic growth of all deletion strains and example growth curves for synergistic and antagonistic interactions
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Additional data file 3:
A figure showing reproducibility of GI values from independent experiments
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Additional data file 4:
A figure showing a comparison between drug dilution and cell dilution with respect to the GI
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Additional data file 5:
A figure showing showing the correlation of GI values resulting from perturbation with HU and different drug inhibitors
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Additional data file 6:
A figure showing clustering sub-analysis (based on gene classifications) of GI data from HU-interacting deletion strains, under growth inhibition with other drugs
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Additional data file 7:
A table showing AUGC and GI data from the genome wide screen for HU interactions
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Additional data file 8:
A table showing a comparison of HU interactions found in different genome-wide screens
Format: XLS Size: 44KB Download file
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Additional data file 9:
A table showing AUGC and GI data from the retest of HU-interacting strains for growth on HU, cisplatin, miconazole, cycloheximide, and t-butyl hydrogen peroxide
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Additional data file 10:
A table showing identity and annotation of genes depicted in Figure 4
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Additional data file 11:
A table showing detailed classification of HU-selected strains
Format: XLS Size: 111KB Download file
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Additional data file 12:
A table showing interaction index values for all HU-selected deletion strains
Format: XLS Size: 58KB Download file
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Additional data file 13:
A table showing AUGC and GI data from the genome wide HU screen in the homozygous diploid deletion set
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Additional data file 14:
A table showing a a comparison of the MATa haploid and homozygous diploid HU 150 screens
Format: XLS Size: 625KB Download file
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Additional data file 15:
The legends to the figures and tables
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