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Detecting DNA regulatory motifs by incorporating positional trends in information content

Katherina J Kechris*, Erik van Zwet, Peter J Bickel and Michael B Eisen

Genome Biology 2004, 5:R50 doi:10.1186/gb-2004-5-7-r50

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A model of evolution with constant selective pressure for regulatory DNA sites

Farida N Enikeeva, Ekaterina A Kotelnikova, Mikhail S Gelfand, Vsevolod J Makeev BMC Evolutionary Biology 2007, 7:125 (27 July 2007)

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Research article   Open Access

C-terminal motif prediction in eukaryotic proteomes using comparative genomics and statistical over-representation across protein families

Ryan S Austin, Nicholas J Provart, Sean R Cutler BMC Genomics 2007, 8:191 (26 June 2007)

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Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data

Bertrand R Huber, Martha L Bulyk BMC Bioinformatics 2006, 7:229 (27 April 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

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A survey of motif discovery methods in an integrated framework

Geir Sandve, Finn Drabløs Biology Direct 2006, 1:11 (6 April 2006)

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