Genome Biology

official impact factor 6.89

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Clustering analysis of SAGE data using a Poisson approach

Li Cai, Haiyan Huang, Seth Blackshaw, Jun S Liu, Connie Cepko and Wing H Wong*

Genome Biology 2004, 5:R51 doi:10.1186/gb-2004-5-7-r51

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BioMed Central: 12 citations

Review   Open Access

Clustering-based approaches to SAGE data mining

Haiying Wang, Huiru Zheng, Francisco Azuaje BioData Mining 2008, 1:5 (17 July 2008)

Research   Open Access

An en masse phenotype and function prediction system for Mus musculus

Murat Taşan, Weidong Tian, David P Hill, Francis D Gibbons, Judith A Blake, Frederick P Roth Genome Biology 2008, 9(Suppl 1):S8 (27 June 2008)

Research   Open Access Highly Accessed

Identification of transcripts with enriched expression in the developing and adult pancreas

Brad G Hoffman, Bogard Zavaglia, Joy Witzsche, Teresa Ruiz de Algara, Mike Beach, Pamela A Hoodless, Steven JM Jones, Marco A Marra, Cheryl D Helgason Genome Biology 2008, 9:R99 (14 June 2008)

The expression profile of different developmental stages of the murine pancreas and predictions of transcription factor interactions, provides a framework for pancreas regulatory networks and development.

Methodology article   Open Access

Modeling SAGE tag formation and its effects on data interpretation within a Bayesian framework

Michael A Gilchrist, Hong Qin, Russell Zaretzki BMC Bioinformatics 2007, 8:403 (18 October 2007)

Software   Open Access

Simcluster: clustering enumeration gene expression data on the simplex space

Ricardo ZN Vêncio, Leonardo Varuzza, Carlos A de B Pereira, Helena Brentani, Ilya Shmulevich BMC Bioinformatics 2007, 8:246 (11 July 2007)

Research   Open Access

LongSAGE analysis of skeletal muscle at three prenatal stages in Tongcheng and Landrace pigs

Zhonglin Tang, Yong Li, Ping Wan, Xiaoping Li, Shuhong Zhao, Bang Liu, Bin Fan, Mengjin Zhu, Mei Yu, Kui Li Genome Biology 2007, 8:R115 (16 June 2007)

Transcriptional profiling of Tongcheng and Landrace pigs using long serial analysis of gene expression provides insight into the molecular mechanism underlying differences in muscle growth.

Methodology article   Open Access

Large-scale clustering of CAGE tag expression data

Kazuro Shimokawa, Yuko Okamura-Oho, Takio Kurita, Martin C Frith, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki BMC Bioinformatics 2007, 8:161 (21 May 2007)

Research article   Open Access

Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data

Zailong Wang, Pearlly Yan, Dustin Potter, Charis Eng, Tim Huang, Shili Lin BMC Bioinformatics 2007, 8:38 (1 February 2007)

Research article   Open Access Highly Accessed

Measuring similarities between gene expression profiles through new data transformations

Kyungpil Kim, Shibo Zhang, Keni Jiang, Li Cai, In-Beum Lee, Lewis J Feldman, Haiyan Huang BMC Bioinformatics 2007, 8:29 (27 January 2007)

Research article   Open Access

Machine learning approaches to supporting the identification of photoreceptor-enriched genes based on expression data

Haiying Wang, Huiru Zheng, David Simpson, Francisco Azuaje BMC Bioinformatics 2006, 7:116 (8 March 2006)

Software   Open Access Highly Accessed

GO-Diff: Mining functional differentiation between EST-based transcriptomes

Zuozhou Chen, Weilin Wang, Xuefeng Ling, Jane Liu, Liangbiao Chen BMC Bioinformatics 2006, 7:72 (16 February 2006)

Methodology article   Open Access

Theme discovery from gene lists for identification and viewing of multiple functional groups

Petri Pehkonen, Garry Wong, Petri Törönen BMC Bioinformatics 2005, 6:162 (29 June 2005)