Call for an enzyme genomics initiative
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Correspondence: Peter D Karp pkarp@ai.sri.com
Genome Biology 2004, 5:401 doi:10.1186/gb-2004-5-8-401
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BioMed Central: 9 citations
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Research article
The human metabolic reconstruction Recon 1 directs hypotheses of novel human metabolic functions Ottar Rolfsson, Bernhard Ø Palsson, Ines Thiele BMC Systems Biology 2011, 5:155 (1 October 2011) |
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Research
Marina V Omelchenko, Michael Y Galperin, Yuri I Wolf, Eugene V Koonin Biology Direct 2010, 5:31 (30 April 2010) Almost 10% of the biochemical reactions in the Enzyme Commission nomenclature are catalyzed by two or more enzymes with different structural folds and hence independent evolutionary origins.
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Software
AnEnPi: identification and annotation of analogous enzymes Thomas D Otto, Ana Guimarães, Wim M Degrave, Antonio B de Miranda BMC Bioinformatics 2008, 9:544 (17 December 2008) |
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Research article
Valérie de Crécy-Lagard, Basma El Yacoubi, Rocío de la Garza, Alexandre Noiriel, Andrew D Hanson BMC Genomics 2007, 8:245 (23 July 2007) |
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Research article
A survey of orphan enzyme activities Yannick Pouliot, Peter D Karp BMC Bioinformatics 2007, 8:244 (10 July 2007) |
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Research article
In silico pathway reconstruction: Iron-sulfur cluster biogenesis in Saccharomyces cerevisiae Rui Alves, Albert Sorribas BMC Systems Biology 2007, 1:10 (31 January 2007) |
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Research article
High precision multi-genome scale reannotation of enzyme function by EFICAz Adrian K Arakaki, Weidong Tian, Jeffrey Skolnick BMC Genomics 2006, 7:315 (13 December 2006) |
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Database
ORENZA: a web resource for studying ORphan ENZyme activities Olivier Lespinet, Bernard Labedan BMC Bioinformatics 2006, 7:436 (6 October 2006) |
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Method
Predicting genes for orphan metabolic activities using phylogenetic profiles Lifeng Chen, Dennis Vitkup Genome Biology 2006, 7:R17 (15 February 2006) A method that combines local structure of a metabolic network with phylogenetic profiles is described and used to assign genes to orphan metabolic activities in yeast and |