Table 3 |
|||||
|
Predicted transcriptional regulators |
|||||
|
Protein |
Cluster number |
CATH ID |
Z-score |
Confidence |
Other hits |
|
|
|||||
|
Winged helix repressor DNA binding domain |
|||||
|
VNG0389C |
1 |
1.10.10.10 |
6.55 |
0.343 |
Weak FFAS hit to 1mzbA (ferric uptake gene regulator) |
|
2 |
1.10.10.10 |
7.40 |
0.4 |
||
|
4 |
1.10.10.10 |
6.76 |
0.357 |
||
|
VNG2614H |
1 |
1.10.10.10 |
6.64 |
0.313 |
PSI-BLAST to 1jgsA (winged helix, MarR) |
|
4 |
1.10.10.60 |
7.12 |
0.419 |
||
|
5 |
1.10.10.10 |
8.09 |
0.469 |
||
|
VNG0768H |
1 |
1.10.10.10 |
7.14 |
0.385 |
Not applicable |
|
9 |
1.10.10.10 |
8.09 |
0.481 |
||
|
VNG2369C |
1 |
1.10.10.10 |
7.14 |
0.323 |
Not applicable |
|
5 |
1.10.10.10 |
7.69 |
0.424 |
||
|
VNG2641H |
1 |
1.10.10.10 |
7.58 |
0.321 |
Not applicable |
|
VNG1640H |
1 |
1.10.10.10 |
7.86 |
0.34 |
Not applicable |
|
VNG5156H |
2 |
1.10.10.10 |
7.94 |
0.401 |
Weak FFAS hit to 1i1gA (LRP-like transcriptional regulator) |
|
3 |
1.10.10.10 |
9.36 |
0.502 |
||
|
4 |
1.10.10.10 |
8.55 |
0.444 |
||
|
VNG5108H |
14 |
1.10.10.10 |
8.04 |
0.388 |
Not applicable |
|
VNG6047H |
1 |
1.10.10.10 |
8.15 |
0.446 |
Weak FFAS hit to 1id3D (histone fold) |
|
3 |
1.10.10.60 |
8.69 |
0.524 |
||
|
14 |
1.10.10.10 |
10.03 |
0.58 |
||
|
VNG0703H |
1 |
1.10.10.10 |
8.17 |
0.439 |
PSI-BLAST to 1i1gA (LPR-like regulator) |
|
2 |
1.10.10.10 |
7.56 |
0.37 |
||
|
4 |
1.10.10.10 |
7.88 |
0.428 |
||
|
5 |
1.10.10.10 |
7.16 |
0.369 |
||
|
6 |
1.10.10.10 |
8.96 |
0.505 |
||
|
VNG0462C |
1 |
1.10.10.10 |
8.42 |
0.527 |
PSI-BLAST to 1lnwA (mexR repressor, winged helix fold) PSI-BLAST to ArsR |
|
2 |
1.10.10.10 |
9.77 |
0.621 |
||
|
4 |
1.10.10.10 |
7.66 |
0.489 |
||
|
5 |
1.10.10.10 |
8.57 |
0.545 |
||
|
VNG2014H |
14 |
1.10.10.10 |
8.72 |
0.379 |
Not applicable |
|
VNG1229H |
1 |
1.10.10.10 |
8.80 |
0.463 |
Not applicable |
|
4 |
1.10.10.10 |
7.95 |
0.339 |
||
|
VNG0837H |
2 |
1.10.10.10 |
9.02 |
0.476 |
Not applicable |
|
4 |
1.10.10.10 |
7.53 |
0.377 |
||
|
5 |
1.10.10.10 |
8.39 |
0.436 |
||
|
VNG6479H |
1 |
1.10.10.10 |
9.29 |
0.53 |
Not applicable |
|
VNG0039H |
1 |
1.10.10.10 |
9.36 |
0.478 |
|
|
2 |
1.10.10.10 |
8.60 |
0.438 |
Weak FFAS hit to 1mkmA (transcriptional regulator IclR, amino-terminal domain) |
|
|
3 |
1.10.10.10 |
9.28 |
0.438 |
||
|
5 |
1.10.10.10 |
9.96 |
0.522 |
||
|
Homeodomain-like superfamily |
|||||
|
VNG0293H |
3 |
1.10.10.60 |
6.14 |
0.395 |
PSI-BLAST to 1i1gA (LPR-like regulator) |
|
4 |
1.10.10.10 |
7.01 |
0.427 |
||
|
5 |
1.10.10.10 |
6.63 |
0.393 |
||
|
VNG2074H |
11 |
1.10.10.60 |
7.09 |
0.354 |
Not applicable |
|
1 |
1.10.10.60 |
6.03 |
0.286 |
||
|
VNG6251H |
3 |
1.10.10.60 |
8.06 |
0.378 |
TMHMM predicts 1 TM helix |
|
Cyclin A, domain 1 fold |
|||||
|
VNG2133H |
2 |
1.10.472.10 |
8.25 |
0.351 |
Not applicable |
|
VNG6287H |
15 |
1.10.472.10 |
9.14 |
0.306 |
Weak FFAS hit to 1smt-A (SMTB repressor) |
|
4 |
1.10.472.10 |
8.93 |
0.283 |
||
|
2 |
1.10.472.10 |
8.50 |
0.269 |
||
|
VNG0511H |
8 |
1.10.472.10 |
9.25 |
0.512 |
PSI-BLAST hit to 1i1gA |
|
VNG1865H |
8 |
1.10.472.10 |
9.55 |
0.365 |
Not applicable |
|
4 |
1.10.472.10 |
7.18 |
0.18 |
||
|
|
|||||
|
Bonneau et al. Genome Biology 2004 5:R52 doi:10.1186/gb-2004-5-8-r52 |
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