Table 4 |
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Plant-specific proteins that are found in the AraCyc database |
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| Locus |
Protein description |
Metabolic pathway |
Enzyme name |
Reaction* |
|
|
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| At1g78240 |
Similar to early-responsive to dehydration stress ERD3 protein |
Carbon monoxide dehydrogenase pathway |
Methyltransferase |
2.1.1.- |
| At1g08550 |
Violaxanthin de-epoxidase precursor, putative |
Carotenoid biosynthesis |
Violaxanthin de-epoxidase |
RXN-325 |
| At1g08550 |
Violaxanthin de-epoxidase precursor, putative |
Carotenoid biosynthesis |
Violaxanthin de-epoxidase |
RXN-314 |
| At1g78240 |
Similar to early-responsive to dehydration stress ERD3 protein |
CO2 formation from methanol |
Methyltransferase |
METHTRANSBARK-RXN |
| At1g53520 |
Chalcone-flavanone isomerase-related |
Flavonoid biosynthesis |
Chalcone isomerase |
5.5.1.6 |
| At5g05270 |
Chalcone-flavanone isomerase family |
Flavonoid biosynthesis |
Chalcone-flavonone isomerase |
5.5.1.6 |
| At5g66220 |
Putative chalcone-flavanone isomerase (chalcone isomerase) (CHI) |
Flavonoid biosynthesis |
Chalcone isomerase |
5.5.1.6 |
| At1g27690 |
Lipase -related |
Glycerol biosynthesis |
Lipase |
3.1.1.3 |
| At5g03980 |
gdsl-motif lipase/hydrolase protein |
Glycerol biosynthesis |
Lipase |
3.1.1.3 |
| At1g13280 |
Allene oxide cyclase family similar to ERD12 |
Jasmonic acid biosynthesis |
Allene oxide cyclase |
5.3.99.6 |
| At1g19640 |
S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase (JMT) |
Jasmonic acid biosynthesis |
S-adenosyl L-methionine:jasmonic acid carboxyl methyltransferase |
RXN1F-28 |
| At1g13280 |
Allene oxide cyclase family similar to ERD12 |
Lipoxygenase pathway |
Allene oxide cyclase |
5.3.99.6 |
| At4g21610 |
Lsd1 like protein |
L-serine degradation |
LSD1 |
4.2.1.13 |
| At1g53520 |
Chalcone-flavanone isomerase-related |
Phytoalexin biosynthesis |
Chalcone isomerase |
5.5.1.6 |
| At5g66220 |
Putative chalcone-flavanone isomerase (chalcone isomerase) (CHI) |
Phytoalexin biosynthesis |
Chalcone isomerase |
5.5.1.6 |
| At5g05270 |
Chalcone-flavanone isomerase family |
Phytoalexin biosynthesis |
Chalcone-flavonone isomerase |
5.5.1.6 |
| At1g03040 |
bHLH protein component of the pyruvate dehydrogenase complex E3 |
Pyruvate dehydrogenase |
Pyruvate dehydrogenase (lipoamide) |
1.2.4.1 |
| At2g45880 |
Glycosyl hydrolase family 14 (beta-amylase) |
Starch degradation† |
Beta-amylase |
3.2.1.2 |
| At3g23920 |
Glycosyl hydrolase family 14 (beta-amylase) |
Starch degradation† |
Beta-amylase |
3.2.1.2 |
| At4g15210 |
Glycosyl hydrolase family 14 (beta-amylase) |
Starch degradation† |
Beta-amylase |
3.2.1.2 |
| At4g17090 |
Glycosyl hydrolase family 14 (beta-amylase) |
Starch degradation† |
Beta-amylase |
3.2.1.2 |
| At5g18670 |
Glycosyl hydrolase family 14 (beta-amylase) |
Starch degradation† |
Beta-amylase |
3.2.1.2 |
| At5g45300 |
Glycosyl hydrolase family 14 (beta-amylase) |
Starch degradation† |
Beta-amylase |
3.2.1.2 |
| At5g55700 |
Glycosyl hydrolase family 14 (beta-amylase) |
Starch degradation† |
Beta-amylase |
3.2.1.2 |
| At2g32290 |
Glycosyl hydrolase family 14 (beta-amylase) |
Starch degradation† |
Beta-amylase |
3.2.1.2 |
|
|
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*EC number is given when available, otherwise the AraCyc [70] frame name for the reaction is given. †AraCyc designation for this metabolic pathway is 'Starch and cellulose biosynthesis'. However, as far as we know, genes in this family are only involved in starch degradation. |
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|
Gutiérrez et al. Genome Biology 2004 5:R53 doi:10.1186/gb-2004-5-8-r53 |
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