Table 6 |
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|
Two groups of plant-specific genes exhibit common expression profiles |
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|
PP* |
Representative EST clone ID |
Locus |
Description |
|
|
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|
Cluster 1† |
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|
PS |
111O21XP |
At1g19180 |
Expressed protein |
|
PS |
123B21T7 |
At1g30755 |
Expressed protein |
|
PS |
209F11T7 |
At1g63090 |
F-box protein (SKP1 interacting partner 3-related) |
|
PS |
181I16T7 |
At1g72510 |
Expressed protein |
|
PS |
148B19T7 |
At1g74950 |
Expressed protein |
|
PS |
40F4T7 |
At2g23320 |
Identical to WRKY DNA-binding protein 15 |
|
EBA |
240G12T7 |
At2g31880 |
Putative leucine-rich repeat transmembrane protein kinase |
|
EBA |
169J16T7 |
At2g39660 |
Putative protein kinase |
|
PS |
172K21XP |
At3g16860 |
Expressed protein |
|
PS |
94C19T7 |
At3g25870 |
Expressed protein |
|
PS |
114O7T7 |
At4g12070 |
Expressed protein |
|
PS |
250F15T7 |
At4g19515 |
Similar to disease resistance protein |
|
PS |
137B1T7 |
At4g30390 |
Expressed protein |
|
PS |
122N24T7 |
At5g13180 |
NAM-like protein; hypothetical senescence upregulated protein SENU5 |
|
PS |
204H15T7 |
At5g13200 |
GRAM-domain-containing protein similar to ABA-responsive protein |
|
E |
195M6T7 |
At5g22250 |
CCR4-associated factor-like protein |
|
PS |
200J12T7 |
At5g62520 |
Expressed protein |
|
Cluster 2‡ |
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|
PS |
169C12T7 |
At1g05250 |
Putative peroxidase |
|
PS |
113H5XP |
At1g52050 |
Jacalin lectin family similar to myrosinase-binding protein homolog |
|
EBA |
121N12T7 |
At1g61590 |
Putative serine/threonine protein kinase |
|
PS |
40E4T7 |
At1g74770 |
Hypothetical protein; predicted by GenemarkHMM |
|
B |
34E12T7 |
At3g24670 |
Polysaccharide lyase family 1 (pectate lyase) |
|
PS |
122J15T7 |
At4g14060 |
Major latex protein (MLP)-related |
|
PS |
194B13T7 |
At4g15390 |
Acyltransferase family |
|
PS |
204N5XP |
At4g26010 |
Putative peroxidase |
|
PS |
144C19T7 |
At5g07080 |
Transferase family similar to 10-deacetylbaccatin III-10-O-acetyl transferase |
|
PS |
116F2T7 |
At5g45070 |
Putative disease resistance protein (TIR class) |
|
PS |
110O2T7 |
At5g57685 |
Unknown protein; predicted by GenemarkHMM |
|
|
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|
Experiments were ranked according to the proportion of genes in the cluster that were differentially expressed. The most important experiments for each cluster are indicated. *PP, phylogenetic profile. †Low expression in flowers compared to leaves, unstable and moderately unstable transcripts. ‡High expression in roots as compared to a reference made of the whole plant, repressed during shoot development from root explants. PS, plant specific; EBA, Arabidopsis protein with similarity to proteins in other eukaryotes, bacteria and archaea; B, Arabidopsis protein with similarity to proteins in bacteria. |
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Gutiérrez et al. Genome Biology 2004 5:R53 doi:10.1186/gb-2004-5-8-r53 |
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