Table 2

Partial list of sequences arrayed in hybridization experiments

Description

Sequence


T20g' perfect match

5'-AGGTGCGTGAGCGGGAGGTCttatt-substrate

T20r' perfect match

5'-AGGTGCGTGTCCGGGAGGTCttatt-substrate

  T20r' - 1 mismatch

5'-AGGTGCGTGTCCCGGAGGTCttatt-substrate

  T20r' - 2 mismatch

5'-AGGTGCGTGTCCCGCAGGTCttatt-substrate

  T20r' - 3 mismatch

5'-AGGTGCGTGACCCGCAGGTCttatt-substrate

  T20r' - 4 mismatch

5'-AGGTGCGTGACCCGCACGTCttatt-substrate

  T20r' - 5 mismatch

5'-AGGTGCGAGACCCGCACGTCttatt-substrate

T12r' perfect match

5'-ttattattCAGTGCCAACGCttatt-substrate

  T12r' 1 mismatch

5'-ttattattCACTGCCAACGCttatt-substrate

  T12r' 2 mismatch

5'-ttattattCACTTCCAACGCttatt-substrate

  T12r' 3 mismatch

5'-ttattattCACTTCTAACGCttatt-substrate

  T12r' 4 mismatch

5'-ttattattCACTTCTATCGCttatt-substrate

YPL110C match

5'-ATCCATGCGTGTAAAGGCGCCGTACGCTGCAGGTCGAC-substrate

YPL110C mismatch

5'-ATCCATTCGTGTAATGGCGCCGAACGCTGCTGGTCGAC-substrate

YPL111W match

5'-ATATACGAGACACGTCGCGCCGTACGCTGCAGGTCGAC-substrate

YPL111W mismatch

5'-ATATACTAGACACGACGCGCCGAACGCTGCTGGTCGAC-substrate

YPL112C match

5'-GATAGTTACACAGCTCGCGCCGTACGCTGCAGGTCGAC-substrate

YPL112C mismatch

5'-GATAGTAACACAGCACGCGCCGAACGCTGCTGGTCGAC-substrate


The lowercase letters represent nonspecific sequence that serves as a spacer or to extend the oligonucleotide to a certain length.

Lausted et al. Genome Biology 2004 5:R58   doi:10.1186/gb-2004-5-8-r58

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