Genome Biology

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Statistical modeling for selecting housekeeper genes

Aniko Szabo*, Charles M Perou, Mehmet Karaca, Laurent Perreard, John F Quackenbush and Philip S Bernard

Genome Biology 2004, 5:R59 doi:10.1186/gb-2004-5-8-r59

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Decreased expression of 17β-hydroxysteroid dehydrogenase type 1 is associated with DNA hypermethylation in colorectal cancer located in the proximal colon

Agnieszka Rawłuszko, Karolina Horbacka, Piotr Krokowicz, Paweł Jagodziński BMC Cancer 2011, 11:522 (19 December 2011)

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Use of Maximum Likelihood-Mixed Models to select stable reference genes: a case of heat stress response in sheep

Magdalena Serrano, Natalia Moreno-Sánchez, Carmen González, Ane Marcos-Carcavilla, Mario Van Poucke, Jorge H Calvo, Judit Salces, Jaime Cubero, María J Carabaño BMC Molecular Biology 2011, 12:36 (17 August 2011)

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Selection of optimal reference genes for normalization in quantitative RT-PCR

Inna Chervoneva, Yanyan Li, Stephanie Schulz, Sean Croker, Chantell Wilson, Scott A Waldman, Terry Hyslop BMC Bioinformatics 2010, 11:253 (14 May 2010)

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Identification of endogenous control genes for normalisation of real-time quantitative PCR data in colorectal cancer

Elrasheid AH Kheirelseid, Kah Chang, John Newell, Michael J Kerin, Nicola Miller BMC Molecular Biology 2010, 11:12 (1 February 2010)

Project Note   Open Access

Validation of internal reference genes for quantitative real-time PCR in a non-model organism, the yellow-necked mouse, Apodemus flavicollis

Jan Axtner, Simone Sommer BMC Research Notes 2009, 2:264 (23 December 2009)

This article is part of a collection on Quantitative real time PCR...

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Selection of reference genes for normalisation of real-time RT-PCR in brain-stem death injury in Ovis aries

Margaret Passmore, Maria Nataatmadja, John F Fraser BMC Molecular Biology 2009, 10:72 (23 July 2009)

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Selection of reliable reference genes for gene expression studies in peach using real-time PCR

Zhaoguo Tong, Zhihong Gao, Fei Wang, Jun Zhou, Zhen Zhang BMC Molecular Biology 2009, 10:71 (20 July 2009)

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Identification of valid reference genes during the differentiation of human myoblasts

Jens Stern-Straeter, Gabriel A Bonaterra, Karl Hörmann, Ralf Kinscherf, Ulrich R Goessler BMC Molecular Biology 2009, 10:66 (2 July 2009)

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Identification and validation of reference genes for quantitative RT-PCR normalization in wheat

Anna R Paolacci, Oronzo A Tanzarella, Enrico Porceddu, Mario Ciaffi BMC Molecular Biology 2009, 10:11 (20 February 2009)

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Suitable reference genes for real-time PCR in human HBV-related hepatocellular carcinoma with different clinical prognoses

Li-Yun Fu, Hu-Liang Jia, Qiong-Zhu Dong, Jin-Cai Wu, Yue Zhao, Hai-Jun Zhou, Ning Ren, Qin-Hai Ye, Lun-Xiu Qin BMC Cancer 2009, 9:49 (6 February 2009)

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Evaluation of suitable reference genes for gene expression studies in bovine muscular tissue

Raquel Pérez, Isabel Tupac-Yupanqui, Susana Dunner BMC Molecular Biology 2008, 9:79 (11 September 2008)

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Correction: Statistical modeling for selecting housekeeper genes

Aniko Szabo, Charles M Perou, Mehmet Karaca, Laurent Perreard, Robert Palais, John F Quackenbush, Philip S Bernard Genome Biology 2008, 9:405 (5 August 2008)

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Identification of genes for normalization of real-time RT-PCR data in breast carcinomas

Maria B Lyng, Anne-Vibeke Lænkholm, Niels Pallisgaard, Henrik J Ditzel BMC Cancer 2008, 8:20 (22 January 2008)

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Evaluation and validation of candidate endogenous control genes for real-time quantitative PCR studies of breast cancer

Roisin E McNeill, Nicola Miller, Michael J Kerin BMC Molecular Biology 2007, 8:107 (27 November 2007)

Research article   Open Access

Identification of new reference genes for the normalisation of canine osteoarthritic joint tissue transcripts from microarray data

Lindsey J Maccoux, Dylan N Clements, Fiona Salway, Philip JR Day BMC Molecular Biology 2007, 8:62 (25 July 2007)

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In search of suitable reference genes for gene expression studies of human renal cell carcinoma by real-time PCR

Monika Jung, Azizbek Ramankulov, Jan Roigas, Manfred Johannsen, Martin Ringsdorf, Glen Kristiansen, Klaus Jung BMC Molecular Biology 2007, 8:47 (8 June 2007)

Methodology article   Open Access

Selection of DDX5 as a novel internal control for Q-RT-PCR from microarray data using a block bootstrap re-sampling scheme

Li-Jen Su, Ching-Wei Chang, Yu-Chung Wu, Kuang-Chi Chen, Chien-Ju Lin, Shu-Ching Liang, Chi-Hung Lin, Jacqueline Whang-Peng, Shih-Lan Hsu, Chen-Hsin Chen, Chi-Ying F Huang BMC Genomics 2007, 8:140 (1 June 2007)

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The interaction of PP1 with BRCA1 and analysis of their expression in breast tumors

Sherry L Winter, Lucine Bosnoyan-Collins, Dushanthi Pinnaduwage, Irene L Andrulis BMC Cancer 2007, 7:85 (19 May 2007)

Methodology article   Open Access

Robust computational reconstitution – a new method for the comparative analysis of gene expression in tissues and isolated cell fractions

Martin Hoffmann, Dirk Pohlers, Dirk Koczan, Hans-Jürgen Thiesen, Stefan Wölfl, Raimund W Kinne BMC Bioinformatics 2006, 7:369 (4 August 2006)

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Classification and risk stratification of invasive breast carcinomas using a real-time quantitative RT-PCR assay

Laurent Perreard, Cheng Fan, John F Quackenbush, Michael Mullins, Nicholas P Gauthier, Edward Nelson, Mary Mone, Heidi Hansen, Saundra S Buys, Karen Rasmussen, Alejandra Orrico, Donna Dreher, Rhonda Walters, Joel Parker, Zhiyuan Hu, Xiaping He, Juan P Palazzo, Olufunmilayo I Olopade, Aniko Szabo, Charles M Perou, Philip S Bernard Breast Cancer Research 2006, 8:R23 (20 April 2006)

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A standard curve based method for relative real time PCR data processing

Alexey Larionov, Andreas Krause, William Miller BMC Bioinformatics 2005, 6:62 (21 March 2005)

A standard curve-based method for processing relative real time PCR data is simple and reliable, avoiding the need to measure PCR efficiency and requiring minimal operator input.