Genome Biology

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Global nucleosome occupancy in yeast

Bradley E Bernstein*, Chih L Liu, Emily L Humphrey, Ethan O Perlstein and Stuart L Schreiber*

Genome Biology 2004, 5:R62 doi:10.1186/gb-2004-5-9-r62

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BioMed Central: 9 citations

Research article   Open Access

Nucleosome-coupled expression differences in closely-related species

Yuanfang Guan, Victoria Yao, Kyle Tsui, Marinella Gebbia, Maitreya J Dunham, Corey Nislow, Olga G Troyanskaya BMC Genomics 2011, 12:466 (26 September 2011)

Research article   Open Access Highly Accessed

G+C content dominates intrinsic nucleosome occupancy

Desiree Tillo, Timothy R Hughes BMC Bioinformatics 2009, 10:442 (22 December 2009)

Methodology article   Open Access

BayesPI - a new model to study protein-DNA interactions: a case study of condition-specific protein binding parameters for Yeast transcription factors

Junbai Wang, Morigen BMC Bioinformatics 2009, 10:345 (20 October 2009)

Research   Open Access

Multiple sequence-directed possibilities provide a pool of nucleosome position choices in different states of activity of a gene

Vinesh Vinayachandran, Rama-Haritha Pusarla, Purnima Bhargava Epigenetics & Chromatin 2009, 2:4 (16 March 2009)

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Genome-scale study of the importance of binding site context for transcription factor binding and gene regulation

Jakub Westholm, Feifei Xu, Hans Ronne, Jan Komorowski BMC Bioinformatics 2008, 9:484 (17 November 2008)

Research article   Open Access

Missing value imputation for microarray gene expression data using histone acetylation information

Qian Xiang, Xianhua Dai, Yangyang Deng, Caisheng He, Jiang Wang, Jihua Feng, Zhiming Dai BMC Bioinformatics 2008, 9:252 (29 May 2008)

Research   Open Access

Statistical assessment of the global regulatory role of histone acetylation in Saccharomyces cerevisiae

Guo-Cheng Yuan, Ping Ma, Wenxuan Zhong, Jun S Liu Genome Biology 2006, 7:R70 (2 August 2006)

An analysis of genome-wide histone acetylation data using a few complementary statistical models gives support to a cumulative effect model for global histone acetylation.

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Histone modifications: from genome-wide maps to functional insights

Fred van Leeuwen, Bas van Steensel Genome Biology 2005, 6:113 (31 May 2005)

Genome-wide mapping approaches provide new opportunities to decipher the complex combinatorial regulatory code of histone modifications but they may suffer from systematic biases.

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Global nucleosome distribution and the regulation of transcription in yeast

Sevinc Ercan, Michael J Carrozza, Jerry L Workman Genome Biology 2004, 5:243 (30 September 2004)

Recent studies show that active regulatory regions of the yeast genome have a lower density of nucleosomes than other regions, and that there is an inverse correlation between nucleosome density and the transcription rate of a gene.