Table 1 |
||||
|
Transcription factors that tend to associate with nucleosome-depleted promoters |
||||
| Transcription factor |
Pathway |
Number of targets |
Nucleosome-depleted |
Functionally cooperative |
|
|
||||
| Rap1 |
Biosynthesis |
291 |
35% |
|
| Fhl1 |
Biosynthesis |
137 |
48% |
 |
| Swi4 |
Cell cycle |
165 |
36% |
|
| Hsf1 |
Environmental response |
114 |
35% |
|
| Gat3 |
Metabolism |
119 |
31% |
|
| Cin5 |
Environmental response |
200 |
23% |
|
| Phd1 |
Metabolism |
138 |
25% |
|
| Dal81 |
Metabolism |
70 |
34% |
|
| Ndd1 |
Cell cycle |
122 |
26% |
|
| Yap6 |
Environmental response |
123 |
26% |
|
| Fkh2 |
Cell cycle |
145 |
24% |
|
| Pdr1 |
Environmental response |
103 |
27% |
|
| Ino4 |
Metabolism |
118 |
25% |
|
| Smp1 |
Environmental response |
99 |
27% |
|
| Yap5 |
Environmental response |
113 |
26% |
|
| Ash1 |
Development |
41 |
41% |
|
|
|
||||
|
Transcription factors are ranked according to the significance of their association with nucleosome-depleted promoters, as determined by a hypergeometric model. Shown are the 16 top-ranked factors along with relevant physiologic pathway, number of promoters bound [1], and percent of target promoters that are nucleosome-depleted. Factors found previously to be functionally cooperative are indicated [22]. |
||||
|
Bernstein et al. Genome Biology 2004 5:R62 doi:10.1186/gb-2004-5-9-r62 |
||||
