Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes
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* Corresponding author: Mark Gerstein Mark.Gerstein@yale.edu
Genome Biology 2004, 5:R64 doi:10.1186/gb-2004-5-9-r64
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Systematic overestimation of gene gain through false diagnosis of gene absence Olga Zhaxybayeva, Camilla L Nesbø, W Ford Doolittle Genome Biology 2007, 8:402 (26 February 2007) Usual BLAST-based methods for assessing gene presence and absence lead to systematic overestimation of within-species gene gain by lateral transfer. |
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Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors? Caroline Deshayes, Emmanuel Perrodou, Sebastien Gallien, Daniel Euphrasie, Christine Schaeffer, Alain Van-Dorsselaer, Olivier Poch, Odile Lecompte, Jean-Marc Reyrat Genome Biology 2007, 8:R20 (12 February 2007) The question of whether bacterial interrupted coding sequences (ICDS) should be individually verified to produce an informative genome sequence is raised after bioinformatic, proteomic and sequencing analyses reveal that a significant proportion of ICDSs in the deposited genome sequence of |
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The role of laterally transferred genes in adaptive evolution Pradeep Marri, Weilong Hao, G Brian Golding BMC Evolutionary Biology 2007, 7(Suppl 1):S8 (8 February 2007) |
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