Genome Biology

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Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets

Xiu-Jie Wang, José L Reyes, Nam-Hai Chua and Terry Gaasterland*

Genome Biology 2004, 5:R65 doi:10.1186/gb-2004-5-9-r65

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BioMed Central: 13 citations

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Employing machine learning for reliable miRNA target identification in plants

Ashwani Jha, Ravi Shankar BMC Genomics 2011, 12:636 (29 December 2011)

Research article   Open Access

Improvement of the design and generation of highly specific plant knockdown lines using primary synthetic microRNAs (pri-smiRNAs)

Sandra Niemeier, Leonardo Alves, Thomas Merkle BMC Research Notes 2010, 3:59 (4 March 2010)

Database   Open Access Highly Accessed

MicroPC (μPC): A comprehensive resource for predicting and comparing plant microRNAs

Wuttichai Mhuantong, Duangdao Wichadakul BMC Genomics 2009, 10:366 (7 August 2009)

Research article   Open Access Highly Accessed

Parallel DNA pyrosequencing unveils new zebrafish microRNAs

Ana R Soares, Patrícia M Pereira, Bruno Santos, Conceição Egas, Ana C Gomes, Joel Arrais, José L Oliveira, Gabriela R Moura, Manuel AS Santos BMC Genomics 2009, 10:195 (27 April 2009)

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Prediction of guide strand of microRNAs from its sequence and secondary structure

Firoz Ahmed, Hifzur Ansari, Gajendra PS Raghava BMC Bioinformatics 2009, 10:105 (9 April 2009)

Research   Open Access

Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information

Je-Gun Joung, Zhangjun Fei BMC Bioinformatics 2009, 10(Suppl 1):S34 (30 January 2009)

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Selection and mutation on microRNA target sequences during rice evolution

Xingyi Guo, Yijie Gui, Yu Wang, Qian-Hao Zhu, Chris Helliwell, Longjiang Fan BMC Genomics 2008, 9:454 (2 October 2008)

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Identification and characteristics of microRNAs from Bombyx mori

Ping-an He, Zuoming Nie, Jianqing Chen, Jian Chen, Zhengbing Lv, Qing Sheng, Songping Zhou, Xiaolian Gao, Lingyin Kong, Xiangfu Wu, Yongfeng Jin, Yaozhou Zhang BMC Genomics 2008, 9:248 (28 May 2008)

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Identification of novel and candidate miRNAs in rice by high throughput sequencing

Ramanjulu Sunkar, Xuefeng Zhou, Yun Zheng, Weixiong Zhang, Jian-Kang Zhu BMC Plant Biology 2008, 8:25 (29 February 2008)

Research   Open Access

Function and anatomy of plant siRNA pools derived from hairpin transgenes

Bess L Chau, Kevin AW Lee Plant Methods 2007, 3:13 (25 November 2007)

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Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)

Yingyin Yao, Ganggang Guo, Zhongfu Ni, Ramanjulu Sunkar, Jinkun Du, Jian-Kang Zhu, Qixin Sun Genome Biology 2007, 8:R96 (1 June 2007)

A small RNA library was used to identify 58 miRNAs from 43 miRNA families from wheat (Triticum aestivum L.), and 46 potential targets were predicted.

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Bioinformatic discovery of microRNA precursors from human ESTs and introns

Sung-Chou Li, Chao-Yu Pan, Wen-chang Lin BMC Genomics 2006, 7:164 (3 July 2006)

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Computational evidence for hundreds of non-conserved plant microRNAs

Morten Lindow, Anders Krogh BMC Genomics 2005, 6:119 (13 September 2005)

A computational approach that identifies genomic sequences that are complementary to known mRNA sequences indicates that the number of plant miRNAs has been greatly underestimated and points to the existence of recently evolved miRNAs.