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Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets

Xiu-Jie Wang1, José L Reyes2, Nam-Hai Chua2 and Terry Gaasterland1*

Author Affiliations

1 Laboratory of Computational Genomics, The Rockefeller University, New York, NY 10021, USA

2 Laboratory of Plant Molecular Biology, The Rockefeller University, New York, NY 10021 USA

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Genome Biology 2004, 5:R65  doi:10.1186/gb-2004-5-9-r65

Published: 31 August 2004

Additional files

Additional data file 1:

The complete list of predicted miRNAs

Format: DOC Size: 74KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional data file 2:

A full list of the secondary structures of predicted precursors of Arabidopsis miRNA candidates and their rice orthologs

Format: DOC Size: 290KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional data file 3:

MPSS evidence for known and predicted Arabidopsis miRNAs

Format: DOC Size: 28KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data

Additional data file 4:

a complete list of predicted target mRNAs and their pairing with miRNA sequences

Format: XLS Size: 107KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data