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The most abundant biological processes assigned to the A. mexicanum contigs |
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| Biological process |
Total number of contigs |
% contigs |
BL/NT |
Fisher's exact (BL/NT) |
|
|
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| Protein metabolism |
324 |
15 |
116/132 |
3/1 |
| Metabolism |
296 |
13.7 |
78/170 |
0/3 |
| Intracellular transport |
268 |
12.4 |
59/53 |
4/5 |
| RNA metabolism |
227 |
10.5 |
127/45 |
22/2 |
| Cell cycle |
194 |
9 |
95/52 |
5/2 |
| Intracellular signaling |
148 |
6.8 |
95/65 |
1/6 |
| DNA metabolism/repair |
90 |
4.1 |
50/12 |
3/0 |
| Development |
69 |
3.2 |
32/27 |
0/2 |
| Cell-cell communication |
81 |
3.7 |
24/42 |
0/6 |
| Differentiation |
27 |
1.5 |
13/7 |
2/3 |
|
The highest-ranking biological process is 'protein metabolism/modification' with 15% of contigs assigned. 'Cellular metabolism', 'intracellular transport' and 'RNA metabolism' have all more than 10% of contigs assigned and represent the most abundant gene families in the two libraries. The percentage contigs refers to the number of contigs assigned a biological process. BL: Blastema; NT: Neural tube. | ||||
Habermann et al. Genome Biology 2004 5:R67 doi:10.1186/gb-2004-5-9-r67 |
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