|
Common protein domains identified in the A. mexicanum contigs and comparison to domain occurrences in other vertebrate species |
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| Domain |
A. mexicanum |
H. sapiens |
M. musculus |
X. laevis |
G. gallus |
D. rerio |
|
|
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| EF-hand |
10 |
319 |
308 |
36 |
48 |
38 |
| Cyclin |
12 |
60 |
58 |
20 |
9 |
15 |
| Chromo |
5 |
26 |
26 |
8 |
5 |
5 |
| Prox1 |
5 |
4 |
2 |
2 |
1 |
2 |
| HLH |
8 (1) |
167 |
179 |
83 |
70 |
75 |
| HOX |
13 (19) |
280 |
352 |
196 |
142 |
250 |
| PAX |
1 (4) |
12 |
31 |
25 |
9 |
13 |
| EGF |
10 |
310 |
281 |
26 |
50 |
32 |
| SET |
2 |
82 |
64 |
4 |
3 |
1 |
| RAS |
37 |
220 |
194 |
34 |
11 |
27 |
| RhoGEF |
4 |
124 |
98 |
4 |
2 |
3 |
| PH |
2 |
453 |
374 |
14 |
10 |
18 |
| PX |
4 |
70 |
74 |
2 |
0 |
3 |
| WD40 |
39 |
547 |
490 |
63 |
12 |
50 |
| Cullin |
3 |
8 |
20 |
0 |
0 |
2 |
| F-box |
2 |
119 |
130 |
11 |
0 |
8 |
| HectC |
3 |
64 |
66 |
4 |
2 |
1 |
| RING |
17 |
374 |
325 |
18 |
16 |
29 |
| KH |
23 (1) |
71 |
52 |
20 |
7 |
10 |
| RRM |
101 (2) |
443 |
438 |
94 |
23 |
69 |
| PDZ |
8 |
260 |
252 |
17 |
11 |
23 |
| Kinase |
69 (2) |
949 |
954 |
210 |
122 |
156 |
| LIM |
5 |
128 |
125 |
22 |
19 |
22 |
| PHD |
4 |
164 |
122 |
13 |
4 |
3 |
|
Numbers in parentheses indicate the number of domains that had been annotated to a protein sequence from A. mexicanum prior to this project. | ||||||
Habermann et al. Genome Biology 2004 5:R67 doi:10.1186/gb-2004-5-9-r67 |
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