|
Pathways (including superpathways) that are common to human, bacteria and plant PGDBs |
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| Class |
Subclass |
Pathway |
|
|
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| Biosynthesis |
Polyamines |
Betaine biosynthesis |
| Polyamine biosynthesis |
||
| Fatty acids and lipids |
Phospholipid biosynthesis |
|
| Fatty acid biosynthesis - initial steps |
||
| Fatty acid elongation - saturated |
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| Cofactors, prosthetic groups, electron carriers |
Pyridine nucleotide biosynthesis |
|
| Thioredoxin pathway |
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| Glutathione biosynthesis |
||
| Pantothenate and coenzyme A biosynthesis |
||
| Pyridoxal 5'-phosphate salvage pathway |
||
| Polyisoprenoid biosynthesis |
||
| FormylTHF biosynthesis |
||
| Cell structures |
Colanic acid building blocks biosynthesis |
|
| GDP-mannose metabolism |
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| Carbohydrates |
Gluconeogenesis |
|
| Trehalose degradation - low osmolarity |
||
| Aminoacyl-tRNAs |
tRNA charging pathway |
|
| Amino acid biosynthesis |
Proline biosynthesis I |
|
| Glycine biosynthesis I |
||
| Serine biosynthesis |
||
| Degradation |
Sugars and polysaccharides |
Glucose 1-phosphate metabolism |
| Galactose metabolism |
||
| Trehalose degradation - low osmolarity |
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| Glycogen degradation |
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| Ribose degradation |
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| Other degradation |
Removal of superoxide radicals |
|
| Nucleosides and nucleotides |
(Deoxy)ribose phosphate metabolism |
|
| Fatty acids |
Fatty acid oxidation pathway |
|
| Carboxylates, other |
Acetate degradation |
|
| Amino acids, amines |
L-serine degradation |
|
| Alcohols |
Glycerol metabolism |
|
| Energy metabolism |
Pyruvate dehydrogenase |
|
| TCA cycle - aerobic respiration |
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| Glycolysis |
||
| Oxidative branch of the pentose phosphate pathway |
||
| Nonoxidative branch of the pentose phosphate pathway |
||
|
HumanCyc, H. sapiens; EcoCyc, E. coli; AraCyc, A. thaliana. The pathways in the table are included in all three PGDBs. | ||
Romero et al. Genome Biology 2004 6:R2 doi:10.1186/gb-2004-6-1-r2 |
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