Table 1

Summary of PeptideAtlas results


Human
Drosophila

Ensembl version
22.34d.1 2004-06-02
19.3a.2, 2003-07-01
Ensembl gene predictions
23758
13525 from Release 3.1 FlyBase
Ensembl gene transcripts
34091
18289
PeptideAtlas version
FullHumanEns22APD0704P0.9
Fly 2
PeptideAtlas peptides
26840
4406
Number of experiments
52
3
PeptideProphet probability threshold
0.9
0.9
PeptideAtlas mapped peptides
25754
4406
PeptideAtlas mapped proteins
9747
3107
PeptideAtlas mapped genes
6423
1876
Percentage of the genome
27 %
14 %

Desiere et al. Genome Biology 2004 6:R9   doi:10.1186/gb-2004-6-1-r9