Research
The dog and rat olfactory receptor repertoires
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* Corresponding author: Francis Galibert francis.galibert@univ-rennes1.fr
1 UMR 6061, Génétique et Développement CNRS-Université de Rennes 1, 35043 Rennes Cedex, France
2 IRISA, campus de Beaulieu, 35042 Rennes Cedex, France
3 Broad Institute of MIT and Harvard, Charles Street, Cambridge, MA 02141, USA
4 NIH/NHGRI/50 South Drive, MSC 8000, Bethesda, MD 20892-8000, USA
Genome Biology 2005, 6:R83 doi:10.1186/gb-2005-6-10-r83
Published: 28 September 2005Additional files
Additional data file 1:
A spreadsheet listing chromosomal locations of dog OR genes and pseudogenes. Clusters are named according to their position, in megabases, from the top of each chromosome.
Format: XLS Size: 14KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 2:
A spreadsheet listing the chromosomal location of rat OR genes and pseudogenes. Clusters are named according to their position, in megabases, from the top of each chromosome.
Format: XLS Size: 14KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 3:
A spreadsheet showing the number of rat and dog OR genes and pseudogenes per family and subfamily. Families 2 to 21 belong to class II and families 51 to 57, to class I.
Format: XLS Size: 85KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 4:
Phylogenetic tree for family 2. Dog and rat OR proteins belonging to the same family were aligned using ClustalW software [31] and a phylogram for each family was constructed using canine ADRB3 gene as the outgroup. Subfamilies are indicated by circled letters. Rat genes are shown in red and dog genes, in blue.
Format: JPEG Size: 400KB Download file
Additional data file 5:
Phylogenetic tree for family 3. Dog and rat OR proteins belonging to the same family were aligned using ClustalW software [31] and a phylogram for each family was constructed using canine ADRB3 gene as the outgroup. Subfamilies are indicated by circled letters. Rat genes are shown in red and dog genes, in blue.
Format: JPEG Size: 188KB Download file
Additional data file 6:
Phylogenetic tree for family 4. Dog and rat OR proteins belonging to the same family were aligned using ClustalW software [31] and a phylogram for each family was constructed using canine ADRB3 gene as the outgroup. Subfamilies are indicated by circled letters. Rat genes are shown in red and dog genes, in blue.
Format: JPEG Size: 1.2MB Download file
Additional data file 7:
Phylogenetic tree for family 5. Dog and rat OR proteins belonging to the same family were aligned using ClustalW software [31] and a phylogram for each family was constructed using canine ADRB3 gene as the outgroup. Subfamilies are indicated by circled letters. Rat genes are shown in red and dog genes, in blue.
Format: JPEG Size: 1.8MB Download file
Additional data file 8:
Phylogenetic tree for family 6. Dog and rat OR proteins belonging to the same family were aligned using ClustalW software [31] and a phylogram for each family was constructed using canine ADRB3 gene as the outgroup. Subfamilies are indicated by circled letters. Rat genes are shown in red and dog genes, in blue.
Format: JPEG Size: 1.2MB Download file
Additional data file 9:
Phylogenetic tree for family 7. Dog and rat OR proteins belonging to the same family were aligned using ClustalW software [31] and a phylogram for each family was constructed using canine ADRB3 gene as the outgroup. Subfamilies are indicated by circled letters. Rat genes are shown in red and dog genes, in blue.
Format: JPEG Size: 1.1MB Download file
Additional data file 10:
Phylogenetic tree for families 8-9. Dog and rat OR proteins belonging to the same family were aligned using ClustalW software [31] and a phylogram for each family was constructed using canine ADRB3 gene as the outgroup. Subfamilies are indicated by circled letters. Rat genes are shown in red and dog genes, in blue.
Format: JPEG Size: 133KB Download file
Additional data file 11:
Phylogenetic tree for families 10-19-20-21. Dog and rat OR proteins belonging to the same family were aligned using ClustalW software [31] and a phylogram for each family was constructed using canine ADRB3 gene as the outgroup. Subfamilies are indicated by circled letters. Rat genes are shown in red and dog genes, in blue.
Format: JPEG Size: 445KB Download file
Additional data file 12:
Phylogenetic tree for family 12. Dog and rat OR proteins belonging to the same family were aligned using ClustalW software [31] and a phylogram for each family was constructed using canine ADRB3 gene as the outgroup. Subfamilies are indicated by circled letters. Rat genes are shown in red and dog genes, in blue.
Format: JPEG Size: 131KB Download file
Additional data file 13:
Phylogenetic tree for family 14. Dog and rat OR proteins belonging to the same family were aligned using ClustalW software [31] and a phylogram for each family was constructed using canine ADRB3 gene as the outgroup. Subfamilies are indicated by circled letters. Rat genes are shown in red and dog genes, in blue.
Format: JPEG Size: 411KB Download file
Additional data file 14:
Phylogenetic tree for family 15. Dog and rat OR proteins belonging to the same family were aligned using ClustalW software [31] and a phylogram for each family was constructed using canine ADRB3 gene as the outgroup. Subfamilies are indicated by circled letters. Rat genes are shown in red and dog genes, in blue.
Format: JPEG Size: 403KB Download file
Additional data file 15:
Phylogenetic tree for family 16. Dog and rat OR proteins belonging to the same family were aligned using ClustalW software [31] and a phylogram for each family was constructed using canine ADRB3 gene as the outgroup. Subfamilies are indicated by circled letters. Rat genes are shown in red and dog genes, in blue.
Format: JPEG Size: 66KB Download file
Additional data file 16:
Phylogenetic tree for families 17-18. Dog and rat OR proteins belonging to the same family were aligned using ClustalW software [31] and a phylogram for each family was constructed using canine ADRB3 gene as the outgroup. Subfamilies are indicated by circled letters. Rat genes are shown in red and dog genes, in blue.
Format: JPEG Size: 190KB Download file
Additional data file 17:
Phylogenetic tree for family 51. Dog and rat OR proteins belonging to the same family were aligned using ClustalW software [31] and a phylogram for each family was constructed using canine ADRB3 gene as the outgroup. Subfamilies are indicated by circled letters. Rat genes are shown in red and dog genes, in blue.
Format: JPEG Size: 437KB Download file
Additional data file 18:
Phylogenetic tree for family 52. Dog and rat OR proteins belonging to the same family were aligned using ClustalW software [31] and a phylogram for each family was constructed using canine ADRB3 gene as the outgroup. Subfamilies are indicated by circled letters. Rat genes are shown in red and dog genes, in blue.
Format: JPEG Size: 582KB Download file
Additional data file 19:
Phylogenetic tree for families 55-57. Dog and rat OR proteins belonging to the same family were aligned using ClustalW software [31] and a phylogram for each family was constructed using canine ADRB3 gene as the outgroup. Subfamilies are indicated by circled letters. Rat genes are shown in red and dog genes, in blue.
Format: JPEG Size: 63KB Download file
Additional data file 20:
Phylogenetic tree for family 56. Dog and rat OR proteins belonging to the same family were aligned using ClustalW software [31] and a phylogram for each family was constructed using canine ADRB3 gene as the outgroup. Subfamilies are indicated by circled letters. Rat genes are shown in red and dog genes, in blue.
Format: JPEG Size: 143KB Download file
