Table 2 |
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|
Numbers of genes that are differentially expressed |
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| Comparisons |
Number of genes differentially expressed |
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|
|
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| Tissue A (number of samples) |
Tissue B (number of samples) |
Total |
Up |
Down |
|
|
||||
| WntH (7) |
VMG (5) |
584 |
121 |
463 |
| WntT (23) |
WntH (7) |
388* |
112 |
276 |
| WntT (23) |
NeuT (12) |
1,296 |
624 |
672 |
| NeuT (12) |
VMG (5) |
1,263* |
419 |
844 |
| WntT, H-ras mutant (12) |
WntT, H-ras wild-type (9) |
40 |
31 |
9 |
| WntT/p53-/- |
WntT (10) |
113 |
43 |
70 |
| WntT/Pten+/- LOH (3) |
WntT (10) |
115 |
45 |
70 |
|
|
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|
Expression ratio is computed by dividing the average expression level of the A group by the average expression level of the B group. The numbers of differentially expressed genes were determined by random permutation (P < 0.001), as described in the Materials and method section. *In selected comparisons, to reduce potential false signals due to stromal effects, the genes that were less than three-fold different in expression were filtered out from the listed total number of genes. LOH, loss of heterozygosity. |
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|
Huang et al. Genome Biology 2005 6:R84 doi:10.1186/gb-2005-6-10-r84 |
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