|
Gene pairs exceeding quantiles |
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| Colon: G/S |
Colon: O/O |
BRCA1: G/S |
BRCA1: O/O |
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|
|
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| Quantile |
# |
o/e |
# |
o/e |
# |
o/e |
# |
o/e |
|
|
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| 0 |
1,446 |
- |
0 |
- |
7 |
- |
4 |
- |
| 10-6 |
2,204 |
1.1·103 |
1 |
5.0·10-1 |
45 |
1.3.101 |
8 |
2.3·100 |
| 10-5 |
5,917 |
3.0·102 |
11 |
5.5·10-1 |
444 |
1.3.101 |
69 |
2.0·100 |
| 10-4 |
11,260 |
5.6·101 |
167 |
8.4·10-1 |
2,473 |
7.0.100 |
584 |
1.7·100 |
| 10-3 |
22,701 |
1.1·101 |
1,924 |
9.6·10-1 |
12488 |
3.6.100 |
5,063 |
1.4·100 |
|
The number of gene pairs (#) that exceed a given quantile of the permutation distribution in the data for colon and BRCA1, along with the ratio of observed versus expected (o/e) number of gene pairs exceeding this threshold. The abbreviations G/S and O/O refer to the scoring function: G/S, gap/substitution scenario; O/O, on/off scoring situation. | ||||||||
Dettling et al. Genome Biology 2005 6:R88 doi:10.1186/gb-2005-6-10-r88 |
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