Table 3 |
|
|
High-confidence predictions for known trans-splicing regions |
|
| Distance from known site (nucleotides) |
Number of regions with sites predicted (n = 17 regions) |
|
|
|
| Exact matches |
12.6 (7-16) |
| 10 |
1.38 (1-2) |
| 25 |
1.5 (1-3) |
| 50 |
1.38 (1-2) |
| Missing predictions |
4.5 (1-8) |
|
|
|
|
Overall performance of the method on a set of known trans-splicing regions (tenfold cross-validation of 214 EST mapped trans-splicing sites). Each test dataset had on average 21.5 known trans-splicing regions, of which on average 17 had predictions. Missing predictions indicate those sequences for which no high-confidence prediction was available or where the nearest prediction was more than 50 nucleotides away. The mean of all ten datasets is reported with the range of values in parentheses. |
|
|
Gopal et al. Genome Biology 2005 6:R95 doi:10.1186/gb-2005-6-11-r95 |
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