Method
Chipper: discovering transcription-factor targets from chromatin immunoprecipitation microarrays using variance stabilization
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* Corresponding author: Frederick P Roth fritz_roth@hms.harvard.edu
1 Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Longwood Avenue, Boston, MA 02115, USA
2 Instituto de BiologĂa Molecular y Celular de Plantas (IBMCP), Universidad PolitĂ©cnica de Valencia, Camino de Vera s/n, 46022 Valencia, Spain
Genome Biology 2005, 6:R96 doi:10.1186/gb-2005-6-11-r96
Published: 1 November 2005Additional files
Additional data File 1:
A tab-delimited file containing the results of our analysis for all intergenic regions studied in our experiments.
Format: TXT Size: 358KB Download file
Additional data File 2:
A detailed description of the comparison between the targets of Sko1 identified by Chipper when applied both to the data presented here and to other Chip2 data [2], and previously published p values using a single-array error model [2].
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Additional data File 3:
A figure illustrating the comparisons made in Additional data file 2.
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Additional data File 4:
A figure illustrating the comparisons made in Additional data file 2.
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Additional data File 5:
A figure comparing the two methods described in Additional data file 2 as applied to results from six additional transcription factors.
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Additional data File 6:
A list of the intergenic regions identified as targets [29].
Format: TXT Size: 3KB Download file